Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0328 ATGGACCCATCTGCAAAGAAGGCTCGTGGCAGGCCCCCGGGCTCTAAGAACAAGGCAAGCCCCTCCTCTCTCCCAATGCCCAAGCCTGACGAGTCCTCCATGAAGGTATTCAATTTCACTGTACCTCCAAACAGAGACATCATGGAGTTCATATTTGACATTGCTCACAAGGACAACGTTAATGTCACTATCCTCAGTGCCTCTGGCAAGATTAATAGTGTGATCCTACGTAACTCCACCGATGATACCACTCAGATCATGATGCATGGCCCTTTCACCTTGCTCTCCCTTTCTGGTTCCTACTTATACAACAACCATAACACCCTTCACTCTGGACCCACCCCTCCATTTCCCCTATCTTTTGGGATAAACATTTCCACCTCTCATGGCGAACTCCTTGGTGGTGTCATTGGTGGTAGCCTCATCTCCGGTGAGGATGTCAGCGTCACGGTCTCCACCTTCAAGAACCCTCAAAGATATGAGAATAATAACAACAATGATAACATCACCTCTGGTGATTTCAGTGAGGGTGGCAACTTGTTGGGATTAGAGTTCATGGGTGAGTGA 567 0.4815 MDPSAKKARGRPPGSKNKASPSSLPMPKPDESSMKVFNFTVPPNRDIMEFIFDIAHKDNVNVTILSASGKINSVILRNSTDDTTQIMMHGPFTLLSLSGSYLYNNHNTLHSGPTPPFPLSFGINISTSHGELLGGVIGGSLISGEDVSVTVSTFKNPQRYENNNNNDNITSGDFSEGGNLLGLEFMGE* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0328 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 163 IPR014476 GO:0003680
Pvu6g0328 188 SUPERFAMILY AF0104/ALDC/Ptd012-like 32 159 - -
Pvu6g0328 188 ProSiteProfiles PPC domain profile profile. 31 175 IPR005175 -
Pvu6g0328 188 CDD DUF296 35 144 IPR005175 -
Pvu6g0328 188 Gene3D - 33 166 - -
Pvu6g0328 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 163 - -
Pvu6g0328 188 MobiDBLite consensus disorder prediction 1 34 - -
Pvu6g0328 188 Pfam Plants and Prokaryotes Conserved (PCC) domain 36 155 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0328 Pvu-Chr6 12940961 12941559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0328 6 161 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.278 3.33e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0328 - - pvu:PHAVU_006G031200g 216.083