Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0324 ATGACTTCCTCACTCGTGAAGATCCAAGGCGAACAGGTTCTCACCAACGATTTTCAGGACCTTTCAATCAAAGATCTGAGTGAGGCAGTCATTCACAAGGTGGGTAATGGAACCCATGGGGGAATCTGTGCTATTTGTCTGGATGAAATATTGCTGCAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCTTACTGTGTAACATGCATTCTTCGATGGGCTACATACCGTGAAAAAGTTACCTGTCCTCAGTGTAAACATCCATTTGAGTTCCTCAATATTCATCGAGCACTTGATGGCAGCATTCAAGATTACATGTTTGAGGAGAGTGTTTGTCTGCTACTTCGAGCCTCATGGTTCAAACCTTTATCGGTTGAAGAACATGTGGTTCACGAAGATGCATATGAGGAACTCGAAGAGTATTATCCGTATGAGGATGAGGAAATGGAGGAAGCTTATTATGGTGGTTCGTCCAGTGTTCGGATTGGCAACCGCAGATGGGGAGATAACGGTTATGTTAGGGGTGGTCGTCAAGAAGCTCGGCCGGTTCACCGGTCGAACTTCCAGGATTCAGGAGCCAGTTCATCGAGGGAGCCAAAAAAGAAAGATGCAGGGAAGGGTAGCACAGGCAGAAGGGCCAAGAGGACACAGAAAAGGGAAGCTGCTGATAAGGCTGCTGAAGCAAAACATAGCAGCTTTCGGTAA 705 0.4652 MTSSLVKIQGEQVLTNDFQDLSIKDLSEAVIHKVGNGTHGGICAICLDEILLQETALVKGCEHAYCVTCILRWATYREKVTCPQCKHPFEFLNIHRALDGSIQDYMFEESVCLLLRASWFKPLSVEEHVVHEDAYEELEEYYPYEDEEMEEAYYGGSSSVRIGNRRWGDNGYVRGGRQEARPVHRSNFQDSGASSSREPKKKDAGKGSTGRRAKRTQKREAADKAAEAKHSSFR* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0324 234 Pfam Ring finger domain 43 86 IPR001841 -
Pvu6g0324 234 ProSiteProfiles Zinc finger RING-type profile. 43 86 IPR001841 -
Pvu6g0324 234 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 231 - -
Pvu6g0324 234 SUPERFAMILY RING/U-box 42 92 - -
Pvu6g0324 234 MobiDBLite consensus disorder prediction 173 234 - -
Pvu6g0324 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 110 IPR013083 -
Pvu6g0324 234 MobiDBLite consensus disorder prediction 195 234 - -
Pvu6g0324 234 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 231 - -
Pvu6g0324 234 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Pvu6g0324 234 SMART ring_2 43 85 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0324 Pvu-Chr6 12893426 12898654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0324 3 232 C3H Transcription Factor Family AT5G19430 56.275 4.88e-80 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0324 - - gmx:100785472 369.392