Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0319 ATGTGGCCCGGGGTGTCGAGGTCATTCAACCACAACCTTTCACCTCACCACGACATCTTCGTGGTGGCGCCCGCGTCGTCGTTCCACCACCACCACCACAACGACGCTGTCTTGTCCGATCCAAGCAACAACAGTTCCAACGGAACTGCACTCGGCGTCAACGTCTTCCCTCTCCTCACCGCCACGCCATGCCTCACTCCCGAGAGCGAGGGCATAATGGGAAACATCAATAACCACCGTAACAGAATTCAGCTATGGCAACCACAGGAATCACCACAACACCAACACGCCGACGGCGTCTTGGCGAGTAACCACCGTGGCAGAATTCAGTTATGGCAAGAGCACGACGAGTCTCCGCCGCAGCAGCAGCAACATCCGAACGCGCACGTGCACGAGCGTGAGGGGAGTGGGAGTGGAAGCGGCACGAGCACGTGCCAGGACTGTGGAAACCAGGCGAAAAAGGATTGCAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGTCACGCACGTGAAGAGCACATGGGTGCCGGCGGCGCGGCGGAGGGAGCGACAGCTCATGACGGTGACAGCAGCGGTTGGGTCCAGTGGGTCCACTTCCGTCACCAAGAAACCTAGGCTCGTGCCTTCCCAGACCACAACCACTTCGCACACTTCCACGTCTAATAACACCACCACTCCTCCTAGGAGTTTCGACACTGGTTCTAGCCACCAAGATGTGAGTTTCAAGGAGTCACTACCTTGCCAAGTGCGTGCACCTGCAGAGTTCAAGTGTGTTCGTGTGACTGCAGTGGATGATGGGGATGACGAGTATGCCTATCAAGCTGTGGTGAAAATTGGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGATAAAAGTGAGTATCCTAATCTATCTGAATTGCATTTGGGTGGTGGTGGAAATGTTGCAAGTGGAAGTGATGGTGGTGGTAGAAATGGGGTTTCTTCTTCCTCTCCAATGGTGGATCCTTCTGATGTCTATGCAGCTTCTGGTGGAGTGTTACTTGGAGGTTCATCAAACTATGGTAATGCAATAAATTAA 1089 0.5399 MWPGVSRSFNHNLSPHHDIFVVAPASSFHHHHHNDAVLSDPSNNSSNGTALGVNVFPLLTATPCLTPESEGIMGNINNHRNRIQLWQPQESPQHQHADGVLASNHRGRIQLWQEHDESPPQQQQHPNAHVHEREGSGSGSGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMTVTAAVGSSGSTSVTKKPRLVPSQTTTTSHTSTSNNTTTPPRSFDTGSSHQDVSFKESLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEDKSEYPNLSELHLGGGGNVASGSDGGGRNGVSSSSPMVDPSDVYAASGGVLLGGSSNYGNAIN* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0319 362 MobiDBLite consensus disorder prediction 315 337 - -
Pvu6g0319 362 Pfam Domain of unknown function (DUF702) 142 299 - -
Pvu6g0319 362 MobiDBLite consensus disorder prediction 136 151 - -
Pvu6g0319 362 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 144 186 IPR006510 -
Pvu6g0319 362 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 251 298 IPR006511 -
Pvu6g0319 362 MobiDBLite consensus disorder prediction 197 243 - -
Pvu6g0319 362 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 362 - -
Pvu6g0319 362 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 17 362 IPR007818 GO:0003700|GO:0006355
Pvu6g0319 362 MobiDBLite consensus disorder prediction 115 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0319 Pvu-Chr6 12724833 12727894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0319 18 342 C2H2 Transcription Factor Family AT5G12330 50.742 2.85e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pvu6g0319 DUF702 2.2e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0319 - - vra:106753021 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0319 6 12724833 12727894 Pvu6g0319 6 12724833 12727894 ECH
Pvu6g0319 6 12724833 12727894 Pvu8g2079 8 51033340 51035981 PCT