Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0316 ATGGAAGAAGCAACTGAGATGCAATCAGAAGAGAATAAATTGTCAATGGAGAAAAATAAGAAAAGAAGACTCAAAACACCTGCCCAGCTCACGGCATTGGAAATTTTTTATAATGATCACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCTGAAGAGTTGGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAGTTGTTGAATGATGAAGTAGGTGCTAATGGACGACAAGATCGTTCAAGTGGTGTTATCCAGGATCGTGGCAGCGGTCTAGTGCAGGATTCGTGTGGAAGCACTAAACATGGTGATTATAGGTATCTGGATCCCAAAGAGGTTGAGAGTCATGGCCTCTATAACCATGAATTTTCAGCTGCAGATATGACCTATCACAGGAATCATCATTATACAGAAAATGATAGTGCAACAGACAACACATCATCTGAGAGTTGCTCATCTTTGCAAGACCCATTGCTTCCTCAAGGACAGGATCCATATGATATGGAGCCTTCTAGTCATTTGATGCCTAACAGGTCTCTTCCGCCCCTAAATCCCAAGGGTGCAAATAATATGGGATATAAACCTTCAGGATATTTAAAAGTGAAGGGAGAGATAGAACATGTTGCTATTACTGCTGTCAAAAAGCAGTTAGGAAATCATTTTCAGGAAGATGGACCTTTACTTAGTGTTGAATTTGACACAATTCCTCCTGGGGCATTTGAAGGCCAACTTACAGATCTAGCTAATGAAGGATACTATGCTGCAAATTCTGCTCTTCCAAATTCACCAGAAGTCTCTGCTGCGAAAAAGCTATCCAGTAGCTCTAGATATGATTCGTATTTTACCAAATTAAGGTTCCAAGATTCACATATGGAAGGAGGTGACTTTGGTTCTTTGCATGGTCCTGATTTCCAGGATAAGAAACCCCACAAGCATATAAATCAAAGACCAACTTTTCACAGTTTTACCAATCATTTTTCTCACAAGAACTCTTCCCTGGATTTCTATGTAGACTCTACTGGGGAAGCATCTGCTTATAATGGTGCTAAAAAACATAGAATGGGTACTAAGCATGGTTTTGAGGGGATGAGGTCAGACTCTGCTTCCAACCCTAGTGACCACTATGAAGAGAATACCCTTGCAGTTAAGCAGATAGATTCACTGTTACATCTCTACGATAACATCAATCTGAAGAATGTACAAAAGAATGAATATGTAAAATCTAAGCCTTCAAATTCAATACATAAGTCTCAAATTTACTTGAATGCTGAAGAAAAAGGGCTTACCAAAAGGATGGCCAAGGAAGAGAAGTTTAATGGCGATAGAAAGTTAAAAAGACATTATCATGATCCAGATGGAATTAGGGTGCTTTCAAATGAAAAGATGGTTGCAAAGCGAGCTAAAGTTGACCCATTTGAACAATATGATGTTAAACAAACACCTATTTCTGACCTGGAACCAAGAAAAAATCAAAGGTCTGCTGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCGGTGGATTAA 1572 0.3912 MEEATEMQSEENKLSMEKNKKRRLKTPAQLTALEIFYNDHKYPTEEMKSELAEELELTEKQISGWFCHRRLKDKKLLNDEVGANGRQDRSSGVIQDRGSGLVQDSCGSTKHGDYRYLDPKEVESHGLYNHEFSAADMTYHRNHHYTENDSATDNTSSESCSSLQDPLLPQGQDPYDMEPSSHLMPNRSLPPLNPKGANNMGYKPSGYLKVKGEIEHVAITAVKKQLGNHFQEDGPLLSVEFDTIPPGAFEGQLTDLANEGYYAANSALPNSPEVSAAKKLSSSSRYDSYFTKLRFQDSHMEGGDFGSLHGPDFQDKKPHKHINQRPTFHSFTNHFSHKNSSLDFYVDSTGEASAYNGAKKHRMGTKHGFEGMRSDSASNPSDHYEENTLAVKQIDSLLHLYDNINLKNVQKNEYVKSKPSNSIHKSQIYLNAEEKGLTKRMAKEEKFNGDRKLKRHYHDPDGIRVLSNEKMVAKRAKVDPFEQYDVKQTPISDLEPRKNQRSAAEMPSSFSEDETAETSSSVD* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0316 523 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 523 - -
Pvu6g0316 523 MobiDBLite consensus disorder prediction 149 168 - -
Pvu6g0316 523 MobiDBLite consensus disorder prediction 502 523 - -
Pvu6g0316 523 Gene3D - 8 91 - -
Pvu6g0316 523 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Pvu6g0316 523 SMART HOX_1 18 80 IPR001356 GO:0003677
Pvu6g0316 523 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Pvu6g0316 523 MobiDBLite consensus disorder prediction 7 23 - -
Pvu6g0316 523 MobiDBLite consensus disorder prediction 1 23 - -
Pvu6g0316 523 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 523 - -
Pvu6g0316 523 MobiDBLite consensus disorder prediction 477 523 - -
Pvu6g0316 523 MobiDBLite consensus disorder prediction 145 197 - -
Pvu6g0316 523 CDD homeodomain 20 75 IPR001356 GO:0003677
Pvu6g0316 523 MobiDBLite consensus disorder prediction 82 110 - -
Pvu6g0316 523 MobiDBLite consensus disorder prediction 84 106 - -
Pvu6g0316 523 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0316 Pvu-Chr6 12598912 12604241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0316 3 523 Homeobox Transcription Factor Family AT4G03250 38.447 4.53e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pvu6g0316 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0316 - - gmx:100812697 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0316 6 12598912 12604241 Pvu6g0316 6 12598912 12604241 ECH
Pvu6g0316 6 12598912 12604241 Pvu8g2076 8 50964671 50969907 PCT