Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0315 ATGTCACGCACTGATACGATGATGACGACGACTTCGGATCTTAATAGAAATGGTCCCGTGGAAAGAGACATTGAACAGGCTATTACTGCTTTAAAAAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGAGGGAAGCCCAAGTTTTGTCCTTTTCGACTTTCCAATGATGAATCTGTTTTGATATGGTTCTCGGGGAAAGAAGAGAAGCACCTTAAACTATCTAATGTTTCTAGGATTAAATCTGGACAACGCACACCAATCTTTCAAAGATATCCGCGGCCTGAGAAGGAATACCAGTCATTTTCTCTCTTTTACAATGATAGATCGTTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCATTAATCTCGCGCAGTCATCACCGCAAGTGGAAACCTGAGTCAAAAAGTGATGGTATTCCATCTGAAGCTAGTAGTCCCCGAGCATACACTAGACGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAATTTGCCAAAGGACAATGGAGATCATCTTCGCCTTCATTGCCCATATGAAAGTCCCCCGAAGAATGGTTTGGATAAAGCATTTTCTGATGTGATTTCTTATCCTATTCCTCCAATGGGTTTCTTCCCTCCAGATTCTGTGAGTGGCTCACTCCACTCCGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCGGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGACGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGCTGTACTGGGTGGTGGGTCTCACCAAGTTGGGAGTGATTTTGGTGTCAAAATGGATTCTCTGTTGCCCAAAGCCTTGGAATCAGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGGAAACATGCGGCCTTAGTTACCAAACAAGGTGAAATTTTTTCCTGTGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCAGATGTTCCCCATCCAAAGCTTATCGAATCTCTAAGTAATACAAATATCGAACTTGTAGCTTGTGGGGAATATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTAGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGGGTAAATGGCCCTTTGGAGGGAATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGGACATTTGGTGTTCTGGGTCATGGAGACAGAAAAAGTGTTTCCTTGCCTAGAGAAATAGAGTCCTTGAAGGGTCTTCGTACTGTTCAGGCTGCTTGTGGGGTTTGGCATACTGCCGCAGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTTGTGGCTCTTGTTGAACCTAATTTTTGTCAAGTGTCATGTGGTCATAGTATGACTGTTGCACTTTCTCGATCAGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAACCCGTGTAGAAGGAAAACTTTCAATGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTAGCAGTTTTAACTTCAAGGACTGAAGTTTTCACGTGGGGGAAGGGTGCTAATGGTCGTTTAGGCCATGGTGATACTGACGACCGAAGCACCCCAACATTAGTGGAAGCTCTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACGGCAGCCATATGCCTGCATAAGTGGGTATGTGGTGTTGACCAGTCTATGTGTTCGGGCTGCCGCTTGCCCTTGAATTTCAAAAGGAAACGCCATAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTATCAAGGCTGCAATGGCACCAAACCCCAACAAACCTTATCGCGTCTGTGATAATTGTTTTAATAAACTAAGGAAAACCACTGAAACTGTTTCTTCATCTCAGTCTTCTATGATCAGAAGAGAAAGTGTTAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGACAAATTTGATTCCAGATCTCATAATCAACTTGCCAGGTTTTCTTCAATTGAATCCTTGAAACAAGTGGACAGCAGATCCTCGAAGAAAAACAAAAAATTGGAATTCAACAGTAGCCGAGTCTCACCTGCTCCAAGTGGTGGTTCACAGTGGGGAGCAGTGAATATTTCAAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCTCGGGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACTCCAACCCCAACAGTAGGAGGACTTTCATCCCCAAAGGTAGTTGTGGATGATGCTAAGAGAACCAATGATAACCTCAGTCAGGAGGTTATTAAATTAAGATCGCAGGTGGAAAACCTGACTCGGAAAGCACAGCATCAAGAAGTGGAGTTGGATAGAACAACTAAACAGTTAAAAGAAGCGATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGGCGAGAGGTTTCCTTTAGGAGTGTCCAGGACTGTCAGATCACCACCCTCTCTTGCTTCCTTTGGCCCAATTCCTGGTTCCAATGACCTTAACAATGCTTCCTTGGATCGATTGAATATCCAAGCAACAAGCTCAGAATCAGACTCAACTGTATCTAATAACCAGTTACTCTCAAATGGATCAAGCACCATCATCAACCGGAGTGCAGGTCACATTAAACAAAGTCAGTCAGATGCTACTAGCACAGGTCACATTAAACATGGTCAATCGGATGCAACTAGTAGAAATGGAAGCAAAACAAAGGATAGTGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTGTATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGGAAACGGTTTAGTGAGAAAGAAGCAGAACAATGGTGGGCGGAGAATCGGGGAAGAGTATATGAACAATACAATGTGCGGACGATTGACAAGTCAACAATTGGTGTCGGGAGTGAGGACCTGGCTCATTGA 3366 0.4326 MSRTDTMMTTTSDLNRNGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSNVSRIKSGQRTPIFQRYPRPEKEYQSFSLFYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWKPESKSDGIPSEASSPRAYTRRSSPLNSPFGSNENLPKDNGDHLRLHCPYESPPKNGLDKAFSDVISYPIPPMGFFPPDSVSGSLHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDAVLGGGSHQVGSDFGVKMDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEIFSCGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVALVEPNFCQVSCGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSMSFVEEIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTDDRSTPTLVEALKDKQVKSIACGTNFTAAICLHKWVCGVDQSMCSGCRLPLNFKRKRHNCYNCGLVFCHSCSSKKSIKAAMAPNPNKPYRVCDNCFNKLRKTTETVSSSQSSMIRRESVNQGSLEFIGKDDKFDSRSHNQLARFSSIESLKQVDSRSSKKNKKLEFNSSRVSPAPSGGSQWGAVNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTVGGLSSPKVVVDDAKRTNDNLSQEVIKLRSQVENLTRKAQHQEVELDRTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMGERFPLGVSRTVRSPPSLASFGPIPGSNDLNNASLDRLNIQATSSESDSTVSNNQLLSNGSSTIINRSAGHIKQSQSDATSTGHIKHGQSDATSRNGSKTKDSETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKEAEQWWAENRGRVYEQYNVRTIDKSTIGVGSEDLAH* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0315 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 478 488 IPR000408 -
Pvu6g0315 1121 Pfam Pleckstrin homology domain 25 131 IPR001849 -
Pvu6g0315 1121 MobiDBLite consensus disorder prediction 1013 1039 - -
Pvu6g0315 1121 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 664 726 IPR017455 -
Pvu6g0315 1121 Gene3D - 250 499 IPR009091 -
Pvu6g0315 1121 MobiDBLite consensus disorder prediction 793 808 - -
Pvu6g0315 1121 Pfam Transcription factor regulating root and shoot growth via Pin3 1047 1102 IPR013591 -
Pvu6g0315 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 319 329 IPR000408 -
Pvu6g0315 1121 Coils Coil 919 946 - -
Pvu6g0315 1121 CDD FYVE_like_SF 669 722 - -
Pvu6g0315 1121 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 24 1107 - -
Pvu6g0315 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 608 659 IPR000408 -
Pvu6g0315 1121 SUPERFAMILY PH domain-like 23 131 - -
Pvu6g0315 1121 MobiDBLite consensus disorder prediction 1013 1050 - -
Pvu6g0315 1121 SMART fyve_4 658 727 IPR000306 GO:0046872
Pvu6g0315 1121 MobiDBLite consensus disorder prediction 147 174 - -
Pvu6g0315 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Pvu6g0315 1121 Pfam Transcription factor BRX N-terminal domain 921 954 IPR027988 -
Pvu6g0315 1121 MobiDBLite consensus disorder prediction 838 867 - -
Pvu6g0315 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 439 IPR000408 -
Pvu6g0315 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 384 436 IPR000408 -
Pvu6g0315 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 333 381 IPR000408 -
Pvu6g0315 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 609 656 IPR000408 -
Pvu6g0315 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 555 604 IPR000408 -
Pvu6g0315 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Pvu6g0315 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 440 488 IPR000408 -
Pvu6g0315 1121 SUPERFAMILY RCC1/BLIP-II 271 661 IPR009091 -
Pvu6g0315 1121 MobiDBLite consensus disorder prediction 138 185 - -
Pvu6g0315 1121 Pfam FYVE zinc finger 660 726 IPR000306 GO:0046872
Pvu6g0315 1121 Gene3D - 500 671 IPR009091 -
Pvu6g0315 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 24 1107 - -
Pvu6g0315 1121 MobiDBLite consensus disorder prediction 951 975 - -
Pvu6g0315 1121 Pfam Unstructured region between BRX_N and BRX domain 963 1024 - -
Pvu6g0315 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 332 IPR000408 -
Pvu6g0315 1121 Gene3D - 23 140 IPR011993 -
Pvu6g0315 1121 ProSiteProfiles BRX domain profile. 1048 1103 IPR013591 -
Pvu6g0315 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 384 IPR000408 -
Pvu6g0315 1121 MobiDBLite consensus disorder prediction 778 808 - -
Pvu6g0315 1121 PRINTS Chromosome condensation regulator RCC1 signature 316 329 IPR000408 -
Pvu6g0315 1121 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Pvu6g0315 1121 PRINTS Chromosome condensation regulator RCC1 signature 385 401 IPR000408 -
Pvu6g0315 1121 PRINTS Chromosome condensation regulator RCC1 signature 426 442 IPR000408 -
Pvu6g0315 1121 PRINTS Chromosome condensation regulator RCC1 signature 442 456 IPR000408 -
Pvu6g0315 1121 PRINTS Chromosome condensation regulator RCC1 signature 545 563 IPR000408 -
Pvu6g0315 1121 PRINTS Chromosome condensation regulator RCC1 signature 603 624 IPR000408 -
Pvu6g0315 1121 SUPERFAMILY FYVE/PHD zinc finger 661 735 IPR011011 -
Pvu6g0315 1121 Coils Coil 870 911 - -
Pvu6g0315 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Pvu6g0315 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Pvu6g0315 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 672 733 IPR013083 -
Pvu6g0315 1121 SMART PH_update 31 134 IPR001849 -
Pvu6g0315 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 426 436 IPR000408 -
Pvu6g0315 1121 CDD PH_PLC_plant-like 22 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0315 Pvu-Chr6 12575212 12588913 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0315 930 1112 Major Intrinsic Protein MIP AT1G31880 33.155 2.91e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0315 - - var:108342748 2058.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0315 6 12575212 12588913 Pvu6g0315 6 12575212 12588913 ECH
Pvu6g0315 6 12575212 12588913 Pvu8g2075 8 50938547 50946789 PCT