Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu6g0307 | ATGGAACGAAGTGGTGGAATGGTAACTGGGTCGCATGAAAGGAATGAACTTGTTACAGTTAGACACGGTTCTGATAGTGGGTCTAAACCCGTAAAGAATTTAAATGGTCAGATTTGTCAAATATGTGGTGATACCATTGGATTAACGGCTACTGGGGATGTGTTTGTTGCTTGTCATGAGTGTGGCCTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTAGATTCACAAGTCACCAAGAGGGTGCTGGAGTGGAGGGTGATGATGATGATGATGAAGATGCTGATGATCTAGATAATGAGATCAACTATGGCCAAGGAAACAATTCCAAGGCAGGGATGCAATGGGAAGAAGATGCTGACTTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAATCCCCATCTAGCAAACGGGCAACCGATGTCTGGTGATATTCCATGTGCTACTTCTGATGCCCAATCTATGCAAACTACATCAGGTCTTATGGCTGCTGCAAAGCAACCGGGTCCTGAAAGTGACGAAGAGATAAGGAGAGTGCCGGAGATCGGAGGTGAAAGTGCTGGAACTGTGGCCTCTCGGCCGGATGCCAGATCAAATGCTGGTGCAGAACGTGTTCAGGGTACAGGAGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTATTGAGGAACAGAGTTTCGGCTCAACAAGCAAGGGAGAGGAAGAAGGCATACTTGATTGATTTGGAAACAAGAGTCAAAGACTTGGAGAAGAAGAATTCAGAGCTCAAGGAAAGACTTTCTACTTTGCAGAATGAGAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAATGA | 948 | 0.4525 | MERSGGMVTGSHERNELVTVRHGSDSGSKPVKNLNGQICQICGDTIGLTATGDVFVACHECGLPLCHSCYEYELKNVSQSCPQCKTRFTSHQEGAGVEGDDDDDEDADDLDNEINYGQGNNSKAGMQWEEDADFSSSSGHDSQIPNPHLANGQPMSGDIPCATSDAQSMQTTSGLMAAAKQPGPESDEEIRRVPEIGGESAGTVASRPDARSNAGAERVQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE* | 316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu6g0307 | 315 | MobiDBLite | consensus disorder prediction | 222 | 256 | - | - | |
| Pvu6g0307 | 315 | Pfam | Zinc-binding RING-finger | 29 | 105 | IPR027934 | - | |
| Pvu6g0307 | 315 | CDD | mRING-HC-C4C4_CesA_plant | 37 | 87 | - | - | |
| Pvu6g0307 | 315 | PANTHER | TRANSCRIPTIONAL ACTIVATOR HAC1 | 164 | 307 | IPR044280 | GO:0000981|GO:0045944 | |
| Pvu6g0307 | 315 | MobiDBLite | consensus disorder prediction | 97 | 112 | - | - | |
| Pvu6g0307 | 315 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Pvu6g0307 | 315 | Gene3D | Single helix bin | 258 | 299 | - | - | |
| Pvu6g0307 | 315 | Coils | Coil | 234 | 303 | - | - | |
| Pvu6g0307 | 315 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - | |
| Pvu6g0307 | 315 | MobiDBLite | consensus disorder prediction | 157 | 177 | - | - | |
| Pvu6g0307 | 315 | MobiDBLite | consensus disorder prediction | 90 | 256 | - | - | |
| Pvu6g0307 | 315 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 113 | IPR013083 | - | |
| Pvu6g0307 | 315 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 237 | 300 | IPR004827 | GO:0003700|GO:0006355 | |
| Pvu6g0307 | 315 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 242 | 257 | IPR004827 | GO:0003700|GO:0006355 | |
| Pvu6g0307 | 315 | CDD | bZIP_HY5-like | 240 | 291 | - | - | |
| Pvu6g0307 | 315 | PANTHER | TRANSCRIPTIONAL ACTIVATOR HAC1 | 164 | 307 | - | - | |
| Pvu6g0307 | 315 | SMART | brlzneu | 235 | 299 | IPR004827 | GO:0003700|GO:0006355 | |
| Pvu6g0307 | 315 | MobiDBLite | consensus disorder prediction | 114 | 150 | - | - | |
| Pvu6g0307 | 315 | Pfam | bZIP transcription factor | 236 | 297 | IPR004827 | GO:0003700|GO:0006355 | |
| Pvu6g0307 | 315 | SUPERFAMILY | RING/U-box | 23 | 109 | - | - | |
| Pvu6g0307 | 315 | SUPERFAMILY | Leucine zipper domain | 239 | 297 | IPR046347 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu6g0307 | Pvu-Chr6 | 12401959 | 12406073 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu6g0307 | 7 | 166 | Glycosyltransferase | AT2G25540 | 55.000 | 9.85e-53 | 184 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bZIP | Pvu6g0307 | zf-UDP | 1e-35 | CL0229 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu6g0307 | K10999 | - | gmx:547806 | 566.229 |