Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0304 ATGACGAGTGTGATACTCAGAAGATCCTCCTCCGTAATCTCGCGCCGCTTCTTCGCCACTCTCGCCTCCATCCAACCGCTTCCGCGCCACCGCGGACTCGCCGTGCTCCGGCACGGTGGCTCCAGCGACGGAGTTGGAGTCAGATCCTTGCATTCGAAATCCGGACCGTTGAACTTCCGCTCGTCGCCGGTTTCTCGCGGGGCGCAGCTCGCCGTGGAGCGCGACTACTCCAATGAAGAGGTCGGTTCCGGCACGAACTGCGACGAAGGACTCGAGATCGCGAAGCTCGGCATCTCGAGGGAGATCGTGGATGCTTTGGCCAAGAAAGGGATCGCAAAGCTGTTTCCTATTCAGAAAGCTGTGCTGGAACCTGCAATGCAGGGACGTGATATGATTGGTCGAGCTAGGACAGGAACTGGGAAAACTCTTGCATTTGGGATACCCATCTTAGACCGGATTATTCAGCTTAATGCTAAGCATGGGCGAGGAAAAGATCCTTTGGCTATGGTTTTGGCTCCAACTAGAGAACTTGCACGGCAGGTTGAGAAGGAATTCAATGAGGCCGCACCTAACCTGGACACGATCTGTCTTTATGGAGGTATGCCCATCCAGCAACAAATGAGGCAGCTTAATTATGGTGTAGATATTGCTGTAGGCACACCCGGTCGAATTATTGATCTTCTCAATAGGAGGGCACTGAATTTGAAGGATGTAAAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCTTGGAGAATTTATCTCCAAATCGTCAGACTCTTATGTTCTCAGCAACAATGCCACCTTGGATAAAGACTATTACCCGCAATTACCTAAACAACCCCCTTACCATTGATCTCGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCTATTGTGTCTGATATGCGCACTAAAGCAGGGATTCTTGTACCCCTGATAACAGAACATGCAAATGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCACATGTGATGGCAAAAAGCCTTAAATGTGAGGCTTTGCATGGAGATATTTCACAAACTCAGAGGGAAAGGACTCTTGCCGGTTTCAGAAACAACGATTTCAATGTTTTAGTGGCAACTGATGTTGCATCACGTGGCCTTGATGTTCCAAATGTGGATCTCGTAATACATTATGAACTCCCCAGTTCATCAGAGATATTTGTTCACCGATCTGGACGAACAGGCCGTGCTGGCAAGAAAGGAGCTGCTATTCTTATTTACTCAGAAGATCAATTCAGGACTGTGAAGACTATTGAGCGTGATGTTGGATGCAAATTTACAGAGCTAGCAAAGATTAATGTTCAGAGTGGATCAGTAGATATGTTTGGAGGATGGAGTGGTGGTCGATTTGGTTCTTCAGGAGGTATGAGGGATCGTCAATCTGGAGGTACAGGTTTTGGTCGCAGTCCTGGATTTGGCCGTTCTGGCAGTTACACTAATTCTGGATTTGGCGGATCTAGCTATGGAAATTCCAGTTCTGGCAGTTACACTAACTCCGGGTTTGGCCGATCTAGCCATGGGGAGACGGGAAGCTTTGGAGGACCAAGTTCTAGCCGTTTTGGCAGCCCTGGTTCAAATCGGTCAGGAGGGGGTTTCGGTGGATTTGGTAGTTCAGATCGATATGGTGGTAGAAAGTGA 1734 0.4781 MTSVILRRSSSVISRRFFATLASIQPLPRHRGLAVLRHGGSSDGVGVRSLHSKSGPLNFRSSPVSRGAQLAVERDYSNEEVGSGTNCDEGLEIAKLGISREIVDALAKKGIAKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIQLNAKHGRGKDPLAMVLAPTRELARQVEKEFNEAAPNLDTICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLNRRALNLKDVKFVVLDEADQMLQVGFQEAVEKILENLSPNRQTLMFSATMPPWIKTITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDMRTKAGILVPLITEHANGGKCIVFTQTKRDADRLSHVMAKSLKCEALHGDISQTQRERTLAGFRNNDFNVLVATDVASRGLDVPNVDLVIHYELPSSSEIFVHRSGRTGRAGKKGAAILIYSEDQFRTVKTIERDVGCKFTELAKINVQSGSVDMFGGWSGGRFGSSGGMRDRQSGGTGFGRSPGFGRSGSYTNSGFGGSSYGNSSSGSYTNSGFGRSSHGETGSFGGPSSSRFGSPGSNRSGGGFGGFGSSDRYGGRK* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0304 577 MobiDBLite consensus disorder prediction 482 510 - -
Pvu6g0304 577 CDD SF2_C_DEAD 310 439 - -
Pvu6g0304 577 Gene3D - 311 472 IPR027417 -
Pvu6g0304 577 MobiDBLite consensus disorder prediction 526 557 - -
Pvu6g0304 577 MobiDBLite consensus disorder prediction 526 577 - -
Pvu6g0304 577 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 470 IPR001650 -
Pvu6g0304 577 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 296 IPR014001 -
Pvu6g0304 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 451 IPR027417 -
Pvu6g0304 577 Gene3D - 92 300 IPR027417 -
Pvu6g0304 577 SMART helicmild6 350 430 IPR001650 -
Pvu6g0304 577 Pfam DEAD/DEAH box helicase 115 284 IPR011545 GO:0003676|GO:0005524
Pvu6g0304 577 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 557 - -
Pvu6g0304 577 PANTHER RNA HELICASE 3 557 - -
Pvu6g0304 577 SMART ultradead3 110 313 IPR014001 -
Pvu6g0304 577 CDD DEADc 102 297 - -
Pvu6g0304 577 Pfam Helicase conserved C-terminal domain 324 430 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0304 Pvu-Chr6 12318596 12325526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0304 96 461 Eukaryotic Initiation Factors Gene Family AT3G19760 32.432 2.23e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0304 - - var:108343286 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0304 6 12318596 12325526 Pvu8g2069 8 50870779 50875386 PCT