Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0300 ATGAACAACAGTGTTCCTGATTGGAACTTTGGGAGTGATTCCTGTGTCACCACCAATCCAAAGAAGCCTATGGGGGTGGACCAAGAGCTTGTGGAGCTCCTGTGGCAAAATGGCCAGGTTGTGTTGCACAGCCAAACACATAGAAAACCGGTTGTGAATTCCATCGCTCCGAGACCGCTTCAGAGAGCTTTTCAATCAACATTAAGGACCAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCCCTTGAGGATCCATTGGAACAAGAATTCTGTTCAAACCTTTTATCTGAACTGCCACAGTGTGATGTTGAGTCCTTTAAGCAAATTAAGCCATTTGAAGAGGGAAGGTTTACTAAATTGGACGCTTCTAGTGCCCCCCATGTGACTGTATGTTCACAATCACCAACTATGAAACCATCCTCTTTTCAGGAATTCTCAGGAATTCCAATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAATAATGACTTGGGTGGACCATGTAAGGTCCAAAAATTCTCTCACTTTTCACCTACCTTTAATGTTTCTTCAGCATTGCCTAGTGCGCATTTTAGAGACAAAATTACTTGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACAGTGGTAGCAATCACATGACCCAAGATCCAGATGCTAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCTGTTGACCCTGAAGCTGTCAGAGATGATGTGCCGAGAACAATTCCTCTGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAGCTGCTACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCTACCAGAAACCAGAGCCAAAAAAGAAAAACAATAGACATTGAAGAATCTGAGGAGCATAGTGAGGACACAGAACTTAAATCACCAGTTGGAAACAAGACATCTCAACGGACAGGGTCGGCTCGAAGGAACCGTGCTGCTGAAGTGCATAATCAATCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAGGAGGCAATCGAATATTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCTCAAATGGGTATGGGAATGGCTACTTCTCCTTTCCCTCCTATTCAAAATCCGATGCAATTACCACGAGTACCGCTTGATCAGCCTGTATCTGCATCTCAGACACCAAACCAGACAATGATGTGTCCAAATCCTATTTTGGGTGCCTTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATGTATTTAGATATGGTCCCCAGGCAGTACAGTATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGACAAAATGGGTTCTTCCACCTTTAACTAA 1653 0.4253 MNNSVPDWNFGSDSCVTTNPKKPMGVDQELVELLWQNGQVVLHSQTHRKPVVNSIAPRPLQRAFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELPQCDVESFKQIKPFEEGRFTKLDASSAPHVTVCSQSPTMKPSSFQEFSGIPIPAPRFHVSDSPQKNNNDLGGPCKVQKFSHFSPTFNVSSALPSAHFRDKITCNMSKNEVRECSLMTVGSSYSGSNHMTQDPDASRASSNGVWTTTLSVDPEAVRDDVPRTIPLSEKGKSEMLEPAATSSSGGSGSSLGKTCSLSTRNQSQKRKTIDIEESEEHSEDTELKSPVGNKTSQRTGSARRNRAAEVHNQSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMTPMMFPGIQHYMSQMGMGMATSPFPPIQNPMQLPRVPLDQPVSASQTPNQTMMCPNPILGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQAVQYSQTMITPSNSSGNMSGAANIDEAVSDKMGSSTFN* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0300 550 MobiDBLite consensus disorder prediction 347 364 - -
Pvu6g0300 550 Coils Coil 355 375 - -
Pvu6g0300 550 MobiDBLite consensus disorder prediction 257 364 - -
Pvu6g0300 550 SMART finulus 355 404 IPR011598 GO:0046983
Pvu6g0300 550 MobiDBLite consensus disorder prediction 284 311 - -
Pvu6g0300 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 414 IPR036638 GO:0046983
Pvu6g0300 550 MobiDBLite consensus disorder prediction 523 550 - -
Pvu6g0300 550 CDD bHLH_AtPIF_like 349 412 - -
Pvu6g0300 550 Gene3D - 344 405 IPR036638 GO:0046983
Pvu6g0300 550 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 527 IPR031066 -
Pvu6g0300 550 MobiDBLite consensus disorder prediction 312 331 - -
Pvu6g0300 550 MobiDBLite consensus disorder prediction 332 346 - -
Pvu6g0300 550 Pfam Helix-loop-helix DNA-binding domain 353 399 IPR011598 GO:0046983
Pvu6g0300 550 PANTHER TRANSCRIPTION FACTOR PIF5 1 527 - -
Pvu6g0300 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0300 Pvu-Chr6 12101442 12107322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0300 1 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 39.815 1.63e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu6g0300 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0300 K16189 - gmx:100784531 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0300 6 12101442 12107322 Pvu6g0300 6 12101442 12107322 ECH
Pvu6g0300 6 12101442 12107322 Pvu8g2039 8 50459809 50465161 PCT