Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0263 ATGCACCATTTTCTGCTTGCTAGATTAACAACTAGGAGCCCCCACTTTGGTGTTCTTTGTCACAATGCCATTCTTTTCTTCAATTCACGTACTTTATCTGTATCAAACACAAAGCATCACAAAGGTGACACCTTTAATTCATTTAGCATCATCAATTCATGTGGGTTGTCCCCTAAAACGGCCCTGGAATTCTCCAAAAGGTTGGAATTGAAAAACCCAGATGGGGCAAATGCTGTAATTGATCTTCTCGGGAACTATGGGTTCTCGGAGACCCAGTTATGTAGCCTTGTAAAGAAACTCCCTTCCGTGCTTTTGTCAAATCCAGACAAGACCCTTTTGCCAAAACTCAAGTTCTTTCGTTCTATTGGGTTTTCACCCACTGACCTTCCTACATTCCTCGTTAGGAAACCTACATTTCTGAAATCAAGCTTGGAGAAAACCATTCGCCCTTGTTATGTGGTAATCAGAAGTCTAGTTCGCTGTGATAAGGAAGTAGTTTCCACTTTAAAGAATGGGCTGTGGCACTTTAACAGCAGAAATGTGGTGAATAATTCACTTCCAAACATAGAGGCTTTGAGACAGCTTGGCCTGCCTCAAGGTTCCATTTCTCTCCTGGTAGCCAATTTTCCTAGTGTCACATTTATGAAGCATGCAGGATTTGTTGAGGCTGTGGAGAAAGTGAAGGAAATGGGGTTTGATCCTTTGAAAACAAGTTTTGTTATGGCCCTTAAAGCTTTTGCAGATATAAGTGAAGCATCATGGAAATCGAAGTTAGAAGTTTTGGAGAAATGTGGCTGGTCCAGTGATATCTCTCTTTTAGCTTTCAAAAAGCATCCCCAGTTTATGGTCTCATCAGAAAGCAAGATTCTTAAAATAATGAGCTTTTTGACGAAGGATGTGGGTTTGGCCCCTGAAGAGATCGCTAGATGCCCTGCTCTTCTTAAATGCAACTTGGAGAAGACAGTTATCCCCAGATTTGCAGTTATTAAAATTTTGAAGAGAAAGGGTTTGATTAAGAGTGATTTGAAAATAAGTACCTTTATTAAGATCAGTGAGAAAGTGTTTTTGGAGAAATATGTCACTCGATTTCAGAGTTATGAGCCACTAGTATTGGCTGCATACAAAGGTCAGAAGTCAAATTGA 1143 0.4016 MHHFLLARLTTRSPHFGVLCHNAILFFNSRTLSVSNTKHHKGDTFNSFSIINSCGLSPKTALEFSKRLELKNPDGANAVIDLLGNYGFSETQLCSLVKKLPSVLLSNPDKTLLPKLKFFRSIGFSPTDLPTFLVRKPTFLKSSLEKTIRPCYVVIRSLVRCDKEVVSTLKNGLWHFNSRNVVNNSLPNIEALRQLGLPQGSISLLVANFPSVTFMKHAGFVEAVEKVKEMGFDPLKTSFVMALKAFADISEASWKSKLEVLEKCGWSSDISLLAFKKHPQFMVSSESKILKIMSFLTKDVGLAPEEIARCPALLKCNLEKTVIPRFAVIKILKRKGLIKSDLKISTFIKISEKVFLEKYVTRFQSYEPLVLAAYKGQKSN* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0263 380 Pfam mTERF 80 308 IPR003690 GO:0003690|GO:0006355
Pvu6g0263 380 Pfam mTERF 293 356 IPR003690 GO:0003690|GO:0006355
Pvu6g0263 380 Gene3D Transcription termination factor 3, mitochondrial 175 368 IPR038538 -
Pvu6g0263 380 PANTHER CGI-12 PROTEIN-RELATED 26 377 IPR003690 GO:0003690|GO:0006355
Pvu6g0263 380 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Pvu6g0263 380 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Pvu6g0263 380 SMART mt_12 237 267 IPR003690 GO:0003690|GO:0006355
Pvu6g0263 380 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Pvu6g0263 380 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Pvu6g0263 380 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Pvu6g0263 380 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 26 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0263 Pvu-Chr6 11289303 11290445 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu6g0263 mTERF 3.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0263 K15032 - gmx:106799612 525.013