Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0258 ATGCACCATTTTCTTAGTTATAGGTTAACAAGTAGAACCCCCCACTTTGGTTTTCTCTGTCACAATGCGGTTCATTTCTTCATTTCAAGAACTCTATCTGTATCAAACACAAATCACCAAAAAAGTTACACCTTTAACGTATATGACATCATCAACTCATCTGGGTTGTCCTCAGAAAAAGCCCTGAAACTCACAAAAAGGTTGGAATTGAAAAAACCAGATGGGGCAAATGCTGTAATTGATCTTCTCAGGAACTACGGGTTTTCTGATACCCACTTACATAGCCTTGTAAAGAAAATCCCTTCTGTGCTTTTGTCAAAACCTGAAAAGACCCTTTTGCCAAAACTCAAGTTCTTCCATTCTATTGGGTTTTCAACCACTGACCTTCCTAGATTCCTCATTGGAAACACTTCATTTTTGAGTTCTAGCTTGGACAAAACTATTATCCCCCGTTACCAGATCATCAAGAGACTAGTTCACAGTGATAAGGAAGTGGTTTCCACCTTGAAGCACGATAGGTGGCACGTCAACCGTGGAAATTTTCTGAGTTCAGTTCAAAATGTTGGGACTTTGAGACAGCTTGGGGTGCCTCAACATTCCATTTCCTTTCTTGTAACCAATTTTCCAAGTGTAACATTTATGAATCATTCGAGATTTGTTGAGGCTGTGGAGAAAGTGAAGGAAATGAGGTTTGATCCTTTGAAAGTAAATTTTGTGGTGGCACTCCAAGTGTTTGCAGAGATGAGTGAAGCAATGTGGAAATCAAAATTAGAGGCTTTTGAGAGGTGGGGCTGGTCCACTGATATCTGTCTTTTAGCTTTCAGAAAGCATCCTCAGTTTCTGATGTTGTCAGACAATAAGATTATGAAAATATTGAGCTTCTTGATGAAAGATATGGGTTTGCCAGTAGAACACATTGTTGGATGCCCCGAAATTCTTAAATGCAACTTGGAGAAGACAGTTATCCCTAGATGTGCAGTTGTTAAGCTTTTGAAGTCAAGGGGTTTGATAAAGAGTGATTTGAAAATAAGTACCTTCATCAAGATCAGTGATAAAGTGTTTTTGGAGAGATATGTGACCCGATTTCAGAAAAATGAACCACTAGTATTAGATGCGTACAAAGGAATTGTGATGGAGATCAAGCTCAAGAGGACATGGAGGCCAATCATCAAGCTCAAGAAGAGGTGGAGGCACAAATGGAGGACGCCCATGGAGGTCAAAGTCCACCTCAAAGGATTACAAGAAGCATGTTCAAAGCTTTGGGAGCTAGAGAACATT 1278 0.3983 MHHFLSYRLTSRTPHFGFLCHNAVHFFISRTLSVSNTNHQKSYTFNVYDIINSSGLSSEKALKLTKRLELKKPDGANAVIDLLRNYGFSDTHLHSLVKKIPSVLLSKPEKTLLPKLKFFHSIGFSTTDLPRFLIGNTSFLSSSLDKTIIPRYQIIKRLVHSDKEVVSTLKHDRWHVNRGNFLSSVQNVGTLRQLGVPQHSISFLVTNFPSVTFMNHSRFVEAVEKVKEMRFDPLKVNFVVALQVFAEMSEAMWKSKLEAFERWGWSTDICLLAFRKHPQFLMLSDNKIMKILSFLMKDMGLPVEHIVGCPEILKCNLEKTVIPRCAVVKLLKSRGLIKSDLKISTFIKISDKVFLERYVTRFQKNEPLVLDAYKGIVMEIKLKRTWRPIIKLKKRWRHKWRTPMEVKVHLKGLQEACSKLWELENI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0258 426 Pfam mTERF 80 296 IPR003690 GO:0003690|GO:0006355
Pvu6g0258 426 Pfam mTERF 247 355 IPR003690 GO:0003690|GO:0006355
Pvu6g0258 426 PANTHER CGI-12 PROTEIN-RELATED 23 376 IPR003690 GO:0003690|GO:0006355
Pvu6g0258 426 Gene3D Transcription termination factor 3, mitochondrial 51 178 IPR038538 -
Pvu6g0258 426 Gene3D Transcription termination factor 3, mitochondrial 179 365 IPR038538 -
Pvu6g0258 426 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 23 376 - -
Pvu6g0258 426 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Pvu6g0258 426 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Pvu6g0258 426 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Pvu6g0258 426 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Pvu6g0258 426 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0258 Pvu-Chr6 11255056 11257889 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu6g0258 mTERF 7.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0258 K15032 - gmx:106799612 565.074