Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0253 ATGGTGCCCAATTTTTTCATTTCAAGATTAATTGCATCTTCATCATTCACAGGCTACAGGAGTACCCATCTTTTATTGGGTTCTCTACTGCCATACAAACACACTGCTTCACTTTTTTTCTTCGATTCTTTCACTTCACGCACTTCCTCTGATTCCGAATCAGATGAAAACCACAAAAAAGGTGACACCTTTACTGTATCTTACCTCATCAACTCATGTGGGGTGTCCCTAACTCTGGCTAGGGAACTCTCCAACAGGATCAATTTGAAAACCCCAGATGGCCCAGATGCTGTCATTGATATCCTCAGCTACTATGGGTTCTCAAAATCCCAGCTTGCAAAGCTTGTGGCGAGACATCCTTCCGTGCTATTTGCAAAAGTAGAGGATACCCTTTTGCCTAAACTCAACTTCTTTCGTTCTATTGGGTTTTCCAACACTGACATACCGAAGATCCTGATTGCGAACCATGGTATCTTGAAGAGGAGCTTGGAAAAATGCATCATCCCTCGCCATGAGATCCTAAAGACAGTAGTTCGTAATGATCGGGAAGTTGTTAGAGCTATTAAAAATGCCCCACTAGGTTTCGTGTATGGTGACTTAATGAATAAGTTGGTTCCAAACATTAACATTTTGAGGCAATGTGGTGTGCCTCAGGCTTCCATCTCTCACCTGGTGACCAATTCTCTGTCTGCAGCATATGTGGAGCATTCCAGGTTTGTGGAAGCTATCAAGACAGTTAAGGAAATTGGATTTAGTCCTTTGAAAATGGACTTTGTTGTTGCTATTCACGTGCTTGTAACTATGAGAAAAGAAGTGTGGGATTCAAGATTTGAGGTTTATGAAAGGTGGGGCTGGAACCGGGAAATGGCTCTTCGAGCATTTAGGAAGTTTCCCAGTTTTATGAAGTTTTCAGGGGAAACATTTTCCAGAAAGATGAGTTTCCTAGTCAAGGATATGGGTTGCCCATCAGAAGCTATTGCTGAATACCCTCTAGTTGTAGCGTACAGCTTGGAGAAGAGGATTGTTCCTAGGTTCTCTGTAATTAAAATCTTGAAATCAAAAGGTCTTCTTGAGAAAAACGTGCCCTTTAGTTCCATTATTTGCACAACTGAGGAAAAGTTCTTGGAGAAATTTGTCGTCAGTTTTCAGAATGTTTTGCCCCTCTTACCAGACCTCTACAGAGGTTTCATCAATCAGTCAAATGTAATGTAG 1212 0.415 MVPNFFISRLIASSSFTGYRSTHLLLGSLLPYKHTASLFFFDSFTSRTSSDSESDENHKKGDTFTVSYLINSCGVSLTLARELSNRINLKTPDGPDAVIDILSYYGFSKSQLAKLVARHPSVLFAKVEDTLLPKLNFFRSIGFSNTDIPKILIANHGILKRSLEKCIIPRHEILKTVVRNDREVVRAIKNAPLGFVYGDLMNKLVPNINILRQCGVPQASISHLVTNSLSAAYVEHSRFVEAIKTVKEIGFSPLKMDFVVAIHVLVTMRKEVWDSRFEVYERWGWNREMALRAFRKFPSFMKFSGETFSRKMSFLVKDMGCPSEAIAEYPLVVAYSLEKRIVPRFSVIKILKSKGLLEKNVPFSSIICTTEEKFLEKFVVSFQNVLPLLPDLYRGFINQSNVM* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0253 403 Gene3D Transcription termination factor 3, mitochondrial 180 385 IPR038538 -
Pvu6g0253 403 SMART mt_12 256 286 IPR003690 GO:0003690|GO:0006355
Pvu6g0253 403 SMART mt_12 185 217 IPR003690 GO:0003690|GO:0006355
Pvu6g0253 403 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Pvu6g0253 403 SMART mt_12 323 357 IPR003690 GO:0003690|GO:0006355
Pvu6g0253 403 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Pvu6g0253 403 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Pvu6g0253 403 PANTHER CGI-12 PROTEIN-RELATED 35 395 IPR003690 GO:0003690|GO:0006355
Pvu6g0253 403 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 35 395 - -
Pvu6g0253 403 Pfam mTERF 269 375 IPR003690 GO:0003690|GO:0006355
Pvu6g0253 403 Pfam mTERF 99 306 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0253 Pvu-Chr6 11023859 11025316 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu6g0253 mTERF 3.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0253 K15032 - gmx:100786641 611.298