Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0240 ATGAATGATAAGGTACAAGACTGTGATGATACCAAGAAGGCTGAAGAAGTTGTGCTTCCTGGCTTCAGATTCCACCCCACAGATGAAGAACTTGTTGGCTTCTATCTGCAGAGAAAGGTGGAAAAGAAGCCTCTTAAAATTGAACTCATCAAACAGGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAGGTGAATTCATTCGGGGACAAAGAATGGTATTTTTTCTGCATAAGAGGGAGGAAGTACAGGAACAGTGTGAGGCCAAACAGAGTAACTAGGTCAGGGTTCTGGAAAGCCACAGGAATAGACAAGTCCATATACTGCCTGAAGGAACCTCATGAATGCATTGGCCTGAAGAAGTCATTGGTGTACTATCGTGGAAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCAAATGCAAAATCCACCACCAACATTGCTAATGCTACCAATAACCTTCATGAAGCTGAGGTGTGGACACTCTGCAGAATATTCAAACGCACCCCAACTTTCAAAAAGTACACTCCAAATTTGAAGGACTCAACAGCCATCACCAAATCCAACACTGTGAATTCCAACACAAGCACCTTAGATTCTGACAACTGCAAGCCATATTTGATCTGCAGAGACACTGAGATGATGCAACAACTAAAGCCAGTATTTGGACAGGTTGATGAAAAGAAACACTTATTTCTTGGTCAGTTTGGCCAACTACCCCATCTTCAAACCCCATCAACCCCTTATCCAAGTTTTTGGAACCAGAATGTTGAAGAGTATGCATTTGCCAATGAGAATTGGGATGACCTCAGATCTGTGGTTCAGTTTGCCATTGATCCTTCCTCTGTGTTTGATTGTACAGAAGAAACACATATTCCACCCTACTTTTCTTAG 921 0.4224 MNDKVQDCDDTKKAEEVVLPGFRFHPTDEELVGFYLQRKVEKKPLKIELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCLKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNAKSTTNIANATNNLHEAEVWTLCRIFKRTPTFKKYTPNLKDSTAITKSNTVNSNTSTLDSDNCKPYLICRDTEMMQQLKPVFGQVDEKKHLFLGQFGQLPHLQTPSTPYPSFWNQNVEEYAFANENWDDLRSVVQFAIDPSSVFDCTEETHIPPYFS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0240 306 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Pvu6g0240 306 ProSiteProfiles NAC domain profile. 18 177 IPR003441 GO:0003677|GO:0006355
Pvu6g0240 306 SUPERFAMILY NAC domain 15 176 IPR036093 GO:0003677|GO:0006355
Pvu6g0240 306 PANTHER - 7 298 - -
Pvu6g0240 306 Gene3D NAC domain 27 181 IPR036093 GO:0003677|GO:0006355
Pvu6g0240 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0240 Pvu-Chr6 10522343 10526782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0240 6 178 NAC Transcription Factor Family AT5G39820 59.140 2.54e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu6g0240 NAM 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0240 - - vun:114187635 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0240 6 10522343 10526782 Pvu8g2017 8 50148719 50151568 PCT