Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0235 ATGGTCACCTTCAGGTTTCACCAGTACCAAGTTGTTGGGAGAGCTCTTCCCACTGAAACTGATGTGCATCCCAAGATCTACAGGATGAAACTCTGGGCCACCAATGAGGTCCGTGCCAAATCTAAGTTCTGGTATTTCTTGAGAAAGGTAAAGAAGGTCAAGAAAAGCAATGGCCAAATGCTAGCCATCAATGAGAGCCGGACTGGTTATCACAACATGTACAAGGAATACCGAGATACTACTCTGAACGGTGCTGTTGAACAAATGTACAACGAAATGGCATCTCGTCATAGAGTCAGGTGTCCATGCATACAGATTATTAAGACTGCTACCATCCCAGCTAAACTTTGCAAAAGGGAGTGCACCAAGCAGTTCCTCGACTCGAAAATCAAGTTCCCTTTGGTGTTCAAGAAGATTAGGCCCCCTACTAGGAAGCTCAAAACAACATACAAGGCATCCAAGCCCAACCTGTTCATGTAA 480 0.45 MVTFRFHQYQVVGRALPTETDVHPKIYRMKLWATNEVRAKSKFWYFLRKVKKVKKSNGQMLAINESRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRCPCIQIIKTATIPAKLCKRECTKQFLDSKIKFPLVFKKIRPPTRKLKTTYKASKPNLFM* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0235 159 PANTHER 60S RIBOSOMAL PROTEIN L18A 119 159 - -
Pvu6g0235 159 PANTHER 60S RIBOSOMAL PROTEIN L18A 66 118 - -
Pvu6g0235 159 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 65 - -
Pvu6g0235 159 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 109 IPR023573 GO:0003735|GO:0005840|GO:0006412
Pvu6g0235 159 PIRSF Ribosomal_L18a 63 159 IPR021138 GO:0003735|GO:0005840|GO:0006412
Pvu6g0235 159 PIRSF Ribosomal_L18a 1 65 IPR021138 GO:0003735|GO:0005840|GO:0006412
Pvu6g0235 159 PANTHER 60S RIBOSOMAL PROTEIN L18A 66 118 IPR028877 -
Pvu6g0235 159 PANTHER 60S RIBOSOMAL PROTEIN L18A 119 159 IPR028877 -
Pvu6g0235 159 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 65 IPR028877 -
Pvu6g0235 159 Gene3D - 1 69 - -
Pvu6g0235 159 SUPERFAMILY RplX-like 64 127 - -
Pvu6g0235 159 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0235 Pvu-Chr6 10378968 10381199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0235 1 159 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 80.899 4.24e-103 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0235 K02882 K22683 gmx:100306365 301.982