Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0219 ATGAGTTCATTTGAGCCAGATGGAAATGGGAAGGAGGAGTCACTTCCACCACCACCACCTGTTGTTCCCTCTGATGTTGTACCTCTGACTGCTGAAGAAGTATTCTCTCATGTTGAACCTGTTAAAAAAAAGGTGTCTCGACTTCCAATTGCCAGACGAGATCTGGGATCGAGAGGAATGAAAATACAATTACTAACTAATCACTTTAAAGTTAATGTCGCTAAAAACGATGGACATTTCTTCCATTATAGCGTGGCTTTTACTTACGAAGATGGACGTCCTGTGGAAGGTAAGGGTGTAGGGAGAAAGATAATGGACAGGGTGCAAGAAACATACCATTCTGACTTAAATGGTAAGGACTTTGCATATGATGGGGAGAAAAGTTTGTTTACTATTGGCTCTCTCCCTCGGAACAAGCTTGAATTTGAAGTTGTTCTGGAGGATGTCACCTCTAACAGGAACAATGGCAATTGCAGCCCTGATGGTAATGGGGATAATGAGAGTGACAGAAAGAGGATGCGACGTCCTTACCATGCAAAGTCATTCAAAGTAGAGATAAGCTACGCAGCAAAAATTCCAATGCAGGCTATCACCAATGCCTTACGTGGGCAAGAGACAGAGAATTTTCAAGAAGGCATTAGAGTTCTTGACATAATTTTGAGGCAGCATGCTGCTAAGCAAGGCTGCTTGCTTGTACGCCAATCTTTTTTCCACAATGATCCAAAAAATTTTGCTGATGTAGGAGGTGGTGTTCTTGGCTGTAGAGGATTCCATTCAAGTTTTAGAACCACACAGAGTGGCCTGTCTCTCAACATAGATGTTTCAACTACCATGATAATTACTCCTGGGCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGTTAGAGATCCTTTTCAACTTGACTGGGTTAAGGCCAAAAGGACCTTAAAGAATCTGAGGATTAAAACCAGGCCATCCAATCAAGAATTCAAAATTAATGGACTCAGTGAATTTTCATGCCAAAAGCAGACTTTTACTTTGAAGGGTAAAGGTGGAGGGGATGGTGGAGATGGTACTGAGGAAATCACTGTTTATGATTACTTTGTTAATGTTCGAAAGATAGATTTGCGATACTCTGCTGAACTTCCATGCATTAATGTTGGCAAGCCTAAACGACCAACTTATTTTCCCATTGAGCTTTGTGAATTGGTATCATTGCAACGATATACAAAAGCTTTGTCCAACCTTCAAAGGGCTTCATTAGTGGAAAAGTCCAGGCAGAAGCCACAAGAGAGGATGAAAATTTTGTCTGATGCACTTAGACGCAGCAACTATGGGTCTGAACCTTTGCTCCGTAATTGTGGAATTTCTATAAGCACTGGTTTCACTGAAGTGGAGGGTCGGGTTTTGCCTGCACCAAGGTTGAAGTTTGGCAATGGCGAGGACATCAATCCAAGGAATGGGAGATGGAATGTTAGCAACAAGAAATTTGTGGAGCCGTCAAAAGTAGAAAGATGGGCTGTTGCTAACTTCTCGGCACGCTGTGATGTACGAGGACTTGTGCGTGATCTGATTAGAATTGGAGATATGAAAGGAATTTTGATAGAGCAGCCGTTTGAGGTGTTTGATGAGAATCCTCAGTTTAGGCGTGCCCCACCCATGGTTAGAGTGGAGAAGATGTTTGAAACAATCCAGTCTAAACTTCCTGGCGCTCCGCAGTTCCTACTCTGTTTACTTCCTGATCGGAAAAATTGTGATATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTTTGGAATCATTAATCAGTGTATGTGTCCTTTAAGGGTCAATGATCAGTACCTTACCAATGTTATGTTGAAGATCAATGCCAAGCTTGGTGGATTGAATTCAATGTTAGGTGTTGAACATACTCCTTCTCTTCCCATTGTTTCCAAAGCTCCCACCCTCATTCTGGGCATGGATGTGTCACATGGCTCTCCTGGGCAGACTGATATTCCTTCAATTGCTGCGGTGGTCAGTTCTAGACAGTGGCCTCTGATATCTAAGTATAGGGCTTGTGTTCGTACCCAATCTGCAAAGGTTGAAATGATTGATAATTTGTTCAAGCAAGTGTCTGAAAAGGAAGATGAAGGCATTATGAGGGAACTTCTGCTTGATTTCTATTCAACTTCAGGAAGGAGAAAACCTGAAAATATTATCATATTCAGGGATGGAGTTAGTGAGTCACAGTTCAATCAAGTTTTGAATATTGAACTTGATCGTATCATTGAGGCTTGCAAATTTCTCGATGAAAATTGGGAGCCAAAGTTTTTGGTAATTGTTGCTCAGAAGAATCACCACACCAGATTTTTCCAGCCTGACTCTCCTGACAATGTCCCTCCTGGAACTGTTATCGACAATAGAATTTGTCATCCCAGAAATTATGATTTCTACCTTTGTGCACATGCTGGAATGATAGGAACTAGCAGGCCTACCCATTACCATGTGCTGCTAGATGAGATTGGTTTCTCTCCGGATCAGCTGCAGGAGCTTGTCCATTCATTATCATACGTGTATCAGAGAAGCACTACTGCCATTTCTGTTGTTGCGCCAATTTGCTATGCACACTTGGCTGCATCCCAGCTGGGGCATTTCATGAAATTGGAGGACAAATCTGATACAACATCAAGCCATGGTGGAGTGAGTGGTGCTGGTGCTGGTGCTGGTGCTGTTCCCGTCCCTCAGATGCCTCCTTTGAAGGAAAATGTGCGCAACACTATGTTCTTTTGTTGA 2760 0.4232 MSSFEPDGNGKEESLPPPPPVVPSDVVPLTAEEVFSHVEPVKKKVSRLPIARRDLGSRGMKIQLLTNHFKVNVAKNDGHFFHYSVAFTYEDGRPVEGKGVGRKIMDRVQETYHSDLNGKDFAYDGEKSLFTIGSLPRNKLEFEVVLEDVTSNRNNGNCSPDGNGDNESDRKRMRRPYHAKSFKVEISYAAKIPMQAITNALRGQETENFQEGIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIITPGPVVDFLISNQNVRDPFQLDWVKAKRTLKNLRIKTRPSNQEFKINGLSEFSCQKQTFTLKGKGGGDGGDGTEEITVYDYFVNVRKIDLRYSAELPCINVGKPKRPTYFPIELCELVSLQRYTKALSNLQRASLVEKSRQKPQERMKILSDALRRSNYGSEPLLRNCGISISTGFTEVEGRVLPAPRLKFGNGEDINPRNGRWNVSNKKFVEPSKVERWAVANFSARCDVRGLVRDLIRIGDMKGILIEQPFEVFDENPQFRRAPPMVRVEKMFETIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADFGIINQCMCPLRVNDQYLTNVMLKINAKLGGLNSMLGVEHTPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKQVSEKEDEGIMRELLLDFYSTSGRRKPENIIIFRDGVSESQFNQVLNIELDRIIEACKFLDENWEPKFLVIVAQKNHHTRFFQPDSPDNVPPGTVIDNRICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDQLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQLGHFMKLEDKSDTTSSHGGVSGAGAGAGAVPVPQMPPLKENVRNTMFFC* 920
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0219 919 Pfam PAZ domain 286 415 IPR003100 GO:0005515
Pvu6g0219 919 Gene3D - 635 919 IPR036397 GO:0003676
Pvu6g0219 919 Pfam N-terminal domain of argonaute 61 220 IPR032474 -
Pvu6g0219 919 Gene3D paz domain 276 403 - -
Pvu6g0219 919 ProSiteProfiles PAZ domain profile. 302 399 IPR003100 GO:0005515
Pvu6g0219 919 Gene3D - 463 629 - -
Pvu6g0219 919 MobiDBLite consensus disorder prediction 879 907 - -
Pvu6g0219 919 Pfam Argonaute linker 2 domain 425 471 IPR032472 -
Pvu6g0219 919 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 918 - -
Pvu6g0219 919 SUPERFAMILY Ribonuclease H-like 552 874 IPR012337 -
Pvu6g0219 919 Pfam Piwi domain 569 876 IPR003165 GO:0003676
Pvu6g0219 919 MobiDBLite consensus disorder prediction 1 24 - -
Pvu6g0219 919 CDD PAZ_argonaute_like 282 398 - -
Pvu6g0219 919 MobiDBLite consensus disorder prediction 153 173 - -
Pvu6g0219 919 Pfam Mid domain of argonaute 478 531 IPR032473 -
Pvu6g0219 919 SMART Piwi_a_2 568 876 IPR003165 GO:0003676
Pvu6g0219 919 CDD Piwi_ago-like 443 868 IPR045246 -
Pvu6g0219 919 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 918 - -
Pvu6g0219 919 SMART DUF1785_2 230 282 IPR014811 -
Pvu6g0219 919 Pfam Argonaute linker 1 domain 232 280 IPR014811 -
Pvu6g0219 919 SUPERFAMILY PAZ domain 277 439 IPR036085 GO:0005515
Pvu6g0219 919 ProSiteProfiles Piwi domain profile. 568 876 IPR003165 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu6g0219 Pvu-Chr6 9945414 9954415 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0219 52 919 Eukaryotic Initiation Factors Gene Family AT5G43810 35.627 1.05e-164 505
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0219 K11593 - gmx:100820376 1668.29
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0219 6 9945414 9954415 Pvu6g0219 6 9945414 9954415 ECH
Pvu6g0219 6 9945414 9954415 Pvu8g2137 8 51777872 51784616 PCT