Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0212 ATGGCTATGGCAGCGCCAGGGCAACTCAACGTGAACGAGTCACCGTCGTGGGGGTCCAGAAGCGTCGATTGCTTCGAGAAGTTGGAGCAAATTGGCGAGGGCACATATGGTCAGGTTTATATGGCTAGAGAGATCAAAACTGGTGAAATTGTTGCTCTGAAAAAGATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACAGCTATTCGCGAAATCAAAATTCTAAAGAAACTACATCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACTTCCCCAGGTCCGGAGAAAGATGATCAAGGGAGGCCAGACGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGACCGACCAGGGATGAGATTCACAGTTCCCCAAATTAAGTGCTACATGCGGCAGCTTCTGACTGGGCTGCATTACTGTCACGTAAATCAAGTACTTCACCGTGATATCAAAGGTTCAAATCTTCTAATAGATAATGAAGGTAATCTGAAACTTGCTGATTTTGGATTGGCACGATCATTTTCTAATGAGCACAATGCAAATCTTACTAATCGTGTCATCACACTATGGTACAGACCCCCTGAGCTGCTGCTTGGGACAACAAGGTATGGACCAGCTGTAGACATGTGGTCTGTGGGGTGCATCTTCGCAGAACTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGACGAGCCAGAACAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCAGATGAAGTGAACTGGCCTGGTGTTTCCAAGACTCCTTGGTATAATCAGTTTAAACCAACGCGACCAATGAAAAGACGTCTCCGGGAAGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTGTTGGAGAAGATGCTGACACTTGATCCTGCTCAGAGAATTACTGCCAAGGATGCGCTTGATGGTGAATATTTCTGGACTGATCCATTACCATGTGATCCTAAGAGTTTACCCAAATATGAGTCATCACACGAGTTCCAGACCAAGAAAAAGCGCCAGCAGCAACGACAAAACGAAGAAAATGCCAAGCGTCTTAAAATGCAGCATCCTCAACAGCATTCGCGGCTGCCCCCTATTCAGCAGGCTGGTCAGCAGCACCCTCAAATGCGACAAGGTCCTAACCACGCTATTCATGGGTCTCAACCAGGAGTTGCTGCAGGGCCTAGCCATCATTATGGGAAGCCTCGAGGTCCCTCTGGTGGGCCTGGAAGATATCCTCCTGGTGGGAACCCTGGTGGGGGATACAATCACCCGAATCGTGGAGGTCAAGGAGGAGGAGGTGGCGGTTATGGCAGTGGGCCATATCCTCCCCAAGGGCGGGGTGCATCGTATGGTTCAAGTGGTATGCCTGGTGGGCCCAGTGGTGGTCCTCGTGGTGGGGGTGGTAGTGGCTATGGAGTTGGAGCTCCAAATTATCCTCCAGGTGCTCCTTATGGTGGATCAGCAGCAGGGCGTGGTTCAAACATGATGGGTGGCAACCGCAACCAACAGTATGGTTGGCAGCAGTAA 1566 0.4796 MAMAAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDDQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQRITAKDALDGEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHSRLPPIQQAGQQHPQMRQGPNHAIHGSQPGVAAGPSHHYGKPRGPSGGPGRYPPGGNPGGGYNHPNRGGQGGGGGGYGSGPYPPQGRGASYGSSGMPGGPSGGPRGGGGSGYGVGAPNYPPGAPYGGSAAGRGSNMMGGNRNQQYGWQQ* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0212 521 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0212 521 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0212 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Pvu6g0212 521 MobiDBLite consensus disorder prediction 507 521 - -
Pvu6g0212 521 MobiDBLite consensus disorder prediction 372 394 - -
Pvu6g0212 521 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Pvu6g0212 521 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0212 521 CDD STKc_CDK9_like 25 324 - -
Pvu6g0212 521 MobiDBLite consensus disorder prediction 335 521 - -
Pvu6g0212 521 MobiDBLite consensus disorder prediction 337 366 - -
Pvu6g0212 521 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 454 - -
Pvu6g0212 521 PANTHER CELL DIVISION PROTEIN KINASE 5 454 - -
Pvu6g0212 521 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Pvu6g0212 521 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Pvu6g0212 521 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0212 Pvu-Chr6 9786426 9795939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0212 1 521 Core Cell Cycle Gene Families AT5G10270 77.186 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu6g0212 Pkinase 4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0212 K08819 - gmx:100793565 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0212 6 9786426 9795939 Pvu8g2127 8 51626844 51631941 PCT