Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0209 ATGAGTAGCGTGACTAGTGGGGGTGATAATCGGAAGATATACAGAGGTTGTAGGTCATCATCATTAGATGAAGAAGGTGAAGTTGGAGGTAACATGGGAGGAGAAGTTCCTCTGAAGAAAGGTCCATGGACTGCAGCAGAGGATGCAATTTTGTTAGAATATGTTAATAAGCACGGACAAGGCAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCACTTGAGACCGGATCTGAAAAAAGGTGCATTTACAGAAGAGGAAGAGAACCGAATCCTTGAGCTCCACGCAAAAATGGGGAACAAATGGGCTCGGATGGCTGCTGAGTTGCCTGGGCGTACGGATAATGAAATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCCGGCTTACCTATCTACCCTCCAGAATTATGTGAGCGGATACTTAATGCAAATCAAGAAAGTCAAAATATTTGTCCCTTGACTGTTGAAGCCTCCCAGCACGATAATCTCTTGCAAACAGACCAATTTGATATACAGGATATGGATTTCAAGACTGTCAAATTTCATCATGGTCCATCACAGGTACCAGGAATTCTTGATATACCTGAAAATTTGTTTGAGCAATGTTCGGATTCATCTCATTTGTTCCCAACACTTTATCCTTCAAAACGTCTCCGGGAGTCAGAAATTCTATACAATAGTTTTGGTAGTTGTACAGCTAATGCTCTTCAACTATTTGATCAGTATGGCAATTATATTGGTGAGAAAATTTATGACCATCCTCGGTTCTATCCTCCTTTTGAATCCGTTCTTAACACCAGTAATCAGTTTCATGGTGATAACATAAATGGCAGCCATGCCATGTTAAATGGCAATGTTTCTTCTTCTGTGCCCTTATTTGGGGCTAGGAAGTTGGAGCTCCCTTCACTCCAATATACAGAAACTCAACATGGTAGCTGGGTCACACATGGGTCCCCGCTACCTTCACTTGAGTCTGTAGATACATTGATTCAGTCTCCTCCAGTTGAGTCTATTCCATCAGATCTCATTTCTCCACAAAGCAGTGGTTTGCTGGAAGCAATAGTCTACAACTCGAAGAGCATGAAAGACTCGAATACTGATTTATTTTTTCCAGTCATAACCGGTGCATCCAATGAAGCAGCTGGGAGTTCAACCTTGAATCATCCCTATAAGACAGAATGGGATGAGCAAGGGGAGTCAAACTCCCCCTTAGGTCAATCTGCTGCTTCAGTTATGACTGACTATACTCCTATAAGCTCAGTAGATGGACCCCAATCAATCGAAACCATTCAAGATCACGATGATAAGCTCGAAGCACTCACCTGGTTCCCAAATAGTTCCTGGAAGAAAGAAAAATCGGAACAGATTGATTTTTCGCAACGTCCTGATGCTTTATTTGACTTAGCTTGGTTTGGAAGTAACACTGAATGTGGAATTAGTCAATCTGATCTAAAAGACGCTCTAAGTGCACTTCTTGGTGAAGATTACAAGTCTAACTTTGGTGAAGATAGCAAGGGTAAGCAGTAG 1578 0.4214 MSSVTSGGDNRKIYRGCRSSSLDEEGEVGGNMGGEVPLKKGPWTAAEDAILLEYVNKHGQGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAFTEEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPELCERILNANQESQNICPLTVEASQHDNLLQTDQFDIQDMDFKTVKFHHGPSQVPGILDIPENLFEQCSDSSHLFPTLYPSKRLRESEILYNSFGSCTANALQLFDQYGNYIGEKIYDHPRFYPPFESVLNTSNQFHGDNINGSHAMLNGNVSSSVPLFGARKLELPSLQYTETQHGSWVTHGSPLPSLESVDTLIQSPPVESIPSDLISPQSSGLLEAIVYNSKSMKDSNTDLFFPVITGASNEAAGSSTLNHPYKTEWDEQGESNSPLGQSAASVMTDYTPISSVDGPQSIETIQDHDDKLEALTWFPNSSWKKEKSEQIDFSQRPDALFDLAWFGSNTECGISQSDLKDALSALLGEDYKSNFGEDSKGKQ* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0209 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Pvu6g0209 525 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Pvu6g0209 525 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 520 - -
Pvu6g0209 525 Gene3D - 39 92 - -
Pvu6g0209 525 CDD SANT 42 87 IPR001005 -
Pvu6g0209 525 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 520 - -
Pvu6g0209 525 SMART sant 39 89 IPR001005 -
Pvu6g0209 525 SMART sant 92 140 IPR001005 -
Pvu6g0209 525 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Pvu6g0209 525 MobiDBLite consensus disorder prediction 398 425 - -
Pvu6g0209 525 CDD SANT 95 136 IPR001005 -
Pvu6g0209 525 Gene3D - 95 168 - -
Pvu6g0209 525 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Pvu6g0209 525 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Pvu6g0209 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Pvu6g0209 525 SUPERFAMILY Homeodomain-like 37 134 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0209 Pvu-Chr6 9644568 9650318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0209 38 523 MYB Transcription Factor Family AT5G06100 39.087 2.14e-93 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu6g0209 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0209 K09422 - gmx:100818609 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0209 6 9644568 9650318 Pvu8g2122 8 51587340 51588782 PCT