Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0205 ATGGCTGTTACCTTCTCAAATCTCCACACAGACACAGGCCTCAAGTCCCTCAACGAATTTTTCTCTGGGAAGACCTACGTTTCTGGGGATCAGTTCACAAAGGACGACATCAAAGTGTACGCTGCCGTTTTGGAGAAGCCGGGCGATGCTTTCCCCAGTGTTGGCAAGTGGTACGAGGTTGTCTCATCTAACCTTGCTGCAAGCTTCCCTGGCAATGCTCAAGGGGTGAGATTCAGTGGCAAAGCTTCTGCTCCAGAGGCTGCTCCTGCAAAACCGGATGCTTCTGCTGCTGAAGATGATGATGACCTTGATCTCTTTGGTGATGAGACTGAGGAAGACAAAAAGGTGGCAGAGGAAAGGGAGGCTGCTAAGAAGTCTACCAAGAAGAAAGAGAGTGGAAAATCTTCTGTTCTGCTAGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCAGGTCTATTGTGGGGAGCATCCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACCATTGTTGACGACCTTGTATCTGTGGACTCCCTTATTGAGGAGACACTGACAGTTGAGCCCATCAACGAGTATGTACAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA 672 0.4747 MAVTFSNLHTDTGLKSLNEFFSGKTYVSGDQFTKDDIKVYAAVLEKPGDAFPSVGKWYEVVSSNLAASFPGNAQGVRFSGKASAPEAAPAKPDASAAEDDDDLDLFGDETEEDKKVAEEREAAKKSTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEETLTVEPINEYVQSCDIVAFNKI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0205 223 CDD EF1B 132 223 IPR014038 GO:0003746|GO:0006414
Pvu6g0205 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Pvu6g0205 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746|GO:0006414
Pvu6g0205 223 MobiDBLite consensus disorder prediction 109 129 - -
Pvu6g0205 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746|GO:0006414
Pvu6g0205 223 Gene3D - 127 223 IPR014717 -
Pvu6g0205 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
Pvu6g0205 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746|GO:0005853|GO:0006414
Pvu6g0205 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 223 - -
Pvu6g0205 223 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Pvu6g0205 223 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 223 - -
Pvu6g0205 223 MobiDBLite consensus disorder prediction 78 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0205 Pvu-Chr6 9489247 9491279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0205 1 223 Eukaryotic Initiation Factors Gene Family AT5G12110 71.491 7.78e-103 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0205 K03232 - gmx:100306132 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0205 6 9489247 9491279 Pvu8g2120 8 51569717 51572840 PCT