Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0204 ATGTCAAGTGGAGCAAGATACTGGTGTTACTCATGCAGACAGCCAATCAGGATTGCCGGGAGGGCCATTTGCCCTTACTGCAATGAAGGCTTCTTGCATGAACTTAATGACATGCGAGGAGTAGTGGAGCGAACTGGGTTTAGATATGCTGTTGATAACTTCACGAGGCAGATAATGGGTGGTAGATACATAAATTTTGGTACTGGGATTAGGAGATCTGGTTCTAGCCAACCTCCTGAACGGACTTGGAGTGTGTTTATGTTTCCTAGTCAAGAGTCAAGTTCTGATCCAGAAGAATTCTCTTATCAACACATTACAAATTACCAGTTTGGTGCATCACAATCTTCAATTAATGCATTGCCAACTATTAAGATCACACGTGAGCACCTCAACTTTGATTCACTGTGTCCTGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGTCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGTATTGTTCCATGGTTAGTTCGGCATAACTCGTGTCCTGTTTGCCGTAGTAAGCTTCCTCCTGAAAGACATTCTAGTTCTCGTGGTCGTGGTACTCAAATTTGGGGCGGATGGAATGCCAGTGATAATAATAGTGACAATACTATCTCTAGAGGCAGGGAGAATAGACCACTGAACAATGGATGGAGAAACCTACTGTCATTTTTTACTTTTTGTAGCCATTCTGTTGTTCTAATTCAGATACTTAATCGTTTCTGCTGA 744 0.422 MSSGARYWCYSCRQPIRIAGRAICPYCNEGFLHELNDMRGVVERTGFRYAVDNFTRQIMGGRYINFGTGIRRSGSSQPPERTWSVFMFPSQESSSDPEEFSYQHITNYQFGASQSSINALPTIKITREHLNFDSLCPVCIERFEVGSEVRKMPCDHIYHSDCIVPWLVRHNSCPVCRSKLPPERHSSSRGRGTQIWGGWNASDNNSDNTISRGRENRPLNNGWRNLLSFFTFCSHSVVLIQILNRFC* 248
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0204 247 MobiDBLite consensus disorder prediction 187 202 - -
Pvu6g0204 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 96 231 - -
Pvu6g0204 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 1 42 - -
Pvu6g0204 247 SUPERFAMILY RING/U-box 116 183 - -
Pvu6g0204 247 Pfam Ring finger domain 136 177 IPR001841 -
Pvu6g0204 247 CDD RING-H2_RNF126_like 136 177 - -
Pvu6g0204 247 ProSiteProfiles Zinc finger RING-type profile. 136 177 IPR001841 -
Pvu6g0204 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 231 - -
Pvu6g0204 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 42 - -
Pvu6g0204 247 SMART ring_2 136 176 IPR001841 -
Pvu6g0204 247 MobiDBLite consensus disorder prediction 183 202 - -
Pvu6g0204 247 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Pvu6g0204 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 183 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu6g0204 Pvu-Chr6 9480567 9483073 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0204 93 204 C3H Transcription Factor Family AT2G44330 37.815 1.32e-18 79.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0204 K11982 - vra:106780704 412.92
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0204 6 9480567 9483073 Pvu8g2119 8 51564987 51567671 PCT