Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu6g0204 | ATGTCAAGTGGAGCAAGATACTGGTGTTACTCATGCAGACAGCCAATCAGGATTGCCGGGAGGGCCATTTGCCCTTACTGCAATGAAGGCTTCTTGCATGAACTTAATGACATGCGAGGAGTAGTGGAGCGAACTGGGTTTAGATATGCTGTTGATAACTTCACGAGGCAGATAATGGGTGGTAGATACATAAATTTTGGTACTGGGATTAGGAGATCTGGTTCTAGCCAACCTCCTGAACGGACTTGGAGTGTGTTTATGTTTCCTAGTCAAGAGTCAAGTTCTGATCCAGAAGAATTCTCTTATCAACACATTACAAATTACCAGTTTGGTGCATCACAATCTTCAATTAATGCATTGCCAACTATTAAGATCACACGTGAGCACCTCAACTTTGATTCACTGTGTCCTGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGTCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGTATTGTTCCATGGTTAGTTCGGCATAACTCGTGTCCTGTTTGCCGTAGTAAGCTTCCTCCTGAAAGACATTCTAGTTCTCGTGGTCGTGGTACTCAAATTTGGGGCGGATGGAATGCCAGTGATAATAATAGTGACAATACTATCTCTAGAGGCAGGGAGAATAGACCACTGAACAATGGATGGAGAAACCTACTGTCATTTTTTACTTTTTGTAGCCATTCTGTTGTTCTAATTCAGATACTTAATCGTTTCTGCTGA | 744 | 0.422 | MSSGARYWCYSCRQPIRIAGRAICPYCNEGFLHELNDMRGVVERTGFRYAVDNFTRQIMGGRYINFGTGIRRSGSSQPPERTWSVFMFPSQESSSDPEEFSYQHITNYQFGASQSSINALPTIKITREHLNFDSLCPVCIERFEVGSEVRKMPCDHIYHSDCIVPWLVRHNSCPVCRSKLPPERHSSSRGRGTQIWGGWNASDNNSDNTISRGRENRPLNNGWRNLLSFFTFCSHSVVLIQILNRFC* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu6g0204 | 247 | MobiDBLite | consensus disorder prediction | 187 | 202 | - | - | |
| Pvu6g0204 | 247 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED | 96 | 231 | - | - | |
| Pvu6g0204 | 247 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED | 1 | 42 | - | - | |
| Pvu6g0204 | 247 | SUPERFAMILY | RING/U-box | 116 | 183 | - | - | |
| Pvu6g0204 | 247 | Pfam | Ring finger domain | 136 | 177 | IPR001841 | - | |
| Pvu6g0204 | 247 | CDD | RING-H2_RNF126_like | 136 | 177 | - | - | |
| Pvu6g0204 | 247 | ProSiteProfiles | Zinc finger RING-type profile. | 136 | 177 | IPR001841 | - | |
| Pvu6g0204 | 247 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 96 | 231 | - | - | |
| Pvu6g0204 | 247 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 42 | - | - | |
| Pvu6g0204 | 247 | SMART | ring_2 | 136 | 176 | IPR001841 | - | |
| Pvu6g0204 | 247 | MobiDBLite | consensus disorder prediction | 183 | 202 | - | - | |
| Pvu6g0204 | 247 | Pfam | zinc-ribbon | 6 | 35 | IPR039525 | GO:0061630 | |
| Pvu6g0204 | 247 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 183 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu6g0204 | Pvu-Chr6 | 9480567 | 9483073 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu6g0204 | 93 | 204 | C3H Transcription Factor Family | AT2G44330 | 37.815 | 1.32e-18 | 79.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu6g0204 | K11982 | - | vra:106780704 | 412.92 |
Event-related genes