Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0203 ATGTCAAGTGGAACAACATACTGGTGTTATACATGCAGGCAGCCAATCTGGCTTGAAGGGAGAGATGCCATTTGCCCTTACTGCGATGGAGGCTTTGTGCAAGAACTTAACGAGCAGCTGCGAGCAGTTTCACACCAGCAAGGCTTTTCATCACAAATGGAAGATTTTCGTCAAATGCCTGATATTATGGATGCTGTAAGAGCTGTTATGGAGCAAAGAGGTTCTGAGCCAAGAATTGGGGTTAGAGATGCTGTTGACAATTTCATGAGGCAGAGAATGGCTGGAAGCTACACAAACTTTGATGTTAGAAGGAGGTTTGGCTCCACCACCACCACCCCACTTCCTGATCAGACTTGGGGGGTCTATAGCTCTGGTCCTTATCTGATATTTCATGGTCAACCTCCTGGCTTCACTATGTCTAACACTGGCTCAAGAAGAGGTCCTAGGCATGTTGATTTTGGTGACTACTTTCTTGGTCCTAGACTTGAAGGACTCATTGAACAACACATAACCAATGATCGCCTTGGTCCACCCCCTGCAGCACGCTCTTCTATTGATGCAATGCCAACCATTAAGATCACAAATGAACACCTTCAATCTGATTCACACTGTGCAGTTTGTAAGGAAAAGTTTGAACTGAGTTCTGAGGCCAGGAAAATGCCATGTGCCCACATTTACCACTCAGACTGTATTGTTCCATGGTTAGTTCAGCACAATTCATGTCCAGTTTGCCGTGTTGAGCTGCCACCTCAAGGACACCCCAGTTCCCGCAGTAGTCGAATTAGGGGAGGAAGGAATGCTAGTGGCACTGGTGGTGACAATATCTCCAGGAGAAGAGGGAATAGAGAGATGAACAATGGAAGGAGAAATCTGCTATCATATTTGTGGCCATTTCGAACTTCTAGTTCAAATACTTGA 918 0.4564 MSSGTTYWCYTCRQPIWLEGRDAICPYCDGGFVQELNEQLRAVSHQQGFSSQMEDFRQMPDIMDAVRAVMEQRGSEPRIGVRDAVDNFMRQRMAGSYTNFDVRRRFGSTTTTPLPDQTWGVYSSGPYLIFHGQPPGFTMSNTGSRRGPRHVDFGDYFLGPRLEGLIEQHITNDRLGPPPAARSSIDAMPTIKITNEHLQSDSHCAVCKEKFELSSEARKMPCAHIYHSDCIVPWLVQHNSCPVCRVELPPQGHPSSRSSRIRGGRNASGTGGDNISRRRGNREMNNGRRNLLSYLWPFRTSSSNT* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0203 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 1 304 - -
Pvu6g0203 305 SMART ring_2 204 244 IPR001841 -
Pvu6g0203 305 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Pvu6g0203 305 MobiDBLite consensus disorder prediction 252 275 - -
Pvu6g0203 305 MobiDBLite consensus disorder prediction 250 286 - -
Pvu6g0203 305 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Pvu6g0203 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 304 - -
Pvu6g0203 305 CDD RING-H2_RNF126_like 204 245 - -
Pvu6g0203 305 SUPERFAMILY RING/U-box 184 251 - -
Pvu6g0203 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 251 IPR013083 -
Pvu6g0203 305 Pfam Ring finger domain 203 245 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0203 Pvu-Chr6 9444274 9446838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0203 174 299 C3H Transcription Factor Family AT1G68180 40.476 6.47e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0203 K11982 - var:108344709 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1989 8 49822431 49823576 Pvu6g0203 6 9444274 9446838 PCT