Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0187 ATGCAGTCACAACGATACTACTATAACGTGTTGAGGTTGGATAACCAAGACACAACGATTGTGTCTGGTGATACTTTCAATTTCCACATCAAAATTGTATATCACTCAGTTGACACAGATTCAGAAGGGTTACAAAATCTGTTTTCTTCATTATCAATTCCCTCTAATGATTTCTTTCGAGAGGGTCAAATTTTCTTACAGTCGCTTTTGTCAGGCTTAAGCTTCCCCATTGAATCCATTGATGAAATAACAGAAGGGGTAGCTTCCTCAGTTCAAGAACTGTTTGAAGTTGGTAGCATTGATGATTATCTCCCTTTGGAATCTCAACACCAAGTCATCCCTTTATTTGTGACAGTTATAATATTGGATTTTGGAAATCATGCAGCTGGGGAAGAATCGTGGGAGGTTTATAGAATGAATCAGTCGAATGAAACCATAACAAAGACCTTCTTGAAGAAATGTACGGTGGTGGAAGGGAGTGATGATTGTTGCATCTGCTTAGAAGAGTTGAATATCAACTGCGAGTGCTACACAATGCCATGCCATCATGAGTTTCATCTACACTGTATTCTCACATGGCTCAAAACTAGTCGCGTCTGTCCCTTGTGTCGTTACTCTTTGCCAACCCTTGAAAACTAG 639 0.3959 MQSQRYYYNVLRLDNQDTTIVSGDTFNFHIKIVYHSVDTDSEGLQNLFSSLSIPSNDFFREGQIFLQSLLSGLSFPIESIDEITEGVASSVQELFEVGSIDDYLPLESQHQVIPLFVTVIILDFGNHAAGEESWEVYRMNQSNETITKTFLKKCTVVEGSDDCCICLEELNINCECYTMPCHHEFHLHCILTWLKTSRVCPLCRYSLPTLEN* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0187 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 147 209 - -
Pvu6g0187 212 SMART ring_2 163 203 IPR001841 -
Pvu6g0187 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 210 IPR013083 -
Pvu6g0187 212 Pfam RING-H2 zinc finger domain 161 204 IPR024766 GO:0008270
Pvu6g0187 212 PANTHER F6A14.12 PROTEIN-RELATED 147 209 - -
Pvu6g0187 212 ProSiteProfiles Zinc finger RING-type profile. 163 204 IPR001841 -
Pvu6g0187 212 SUPERFAMILY RING/U-box 157 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0187 Pvu-Chr6 9043007 9043645 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0187 145 208 C3H Transcription Factor Family AT1G18760 43.750 1.30e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0187 - - pvu:PHAVU_006G017900g 411.764