Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0186 ATGCCGTCACAAGGATACTACTATAACGTGTTGAGGTTGGATAACCAAGACACAACGATTGTGTCTGGTGATACTTTCAATTTCCACATCAAAATTGAATATCACTCAGTTGACACAGATACAGAAGGGTTGCAAAATCTATTTTCTTCATTATCAATTTCCTCTAATGATTTCTTCCGAGAGGGTCAAACTTTCTTACAGTCACTTTTGTCAGGCTTAAGCTTCTCCATTGAATCCATTGATGAAATAACAGAAGGGGTAGTTTCCTCAGTTCAAGAACTGTTTGAAGTTGGTAGCATTGATGATTATCTCCCTTTGGAATCTCAACACCAAGTCATCCCTTTATTTGTGACAATTATAATATTGGATTTTGGATTTCATGCAGCTGGGGAAGATGCATCTGGGGAAGAATCGTGGGAGGTTTATAGAATGAATCAGTCGAATGAAACCATAACAAAGACCTTCTTGAAGAAATGTACGGTGGTGGAAGGGAGTGATGATTGTTGCATCTGCTTAGAAGAGTTGAATATCAACTGCGAGTGCTACACAATGCCATGCCATCATGAGTTTCATCTACACTGTATTCTCACATGGCTCAAAACTAGTCGCGTCTGTCCCTTGTGTCGTTACTCTTTGCCAACCCTTGACAACTAG 654 0.3976 MPSQGYYYNVLRLDNQDTTIVSGDTFNFHIKIEYHSVDTDTEGLQNLFSSLSISSNDFFREGQTFLQSLLSGLSFSIESIDEITEGVVSSVQELFEVGSIDDYLPLESQHQVIPLFVTIIILDFGFHAAGEDASGEESWEVYRMNQSNETITKTFLKKCTVVEGSDDCCICLEELNINCECYTMPCHHEFHLHCILTWLKTSRVCPLCRYSLPTLDN* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0186 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 214 - -
Pvu6g0186 217 ProSiteProfiles Zinc finger RING-type profile. 168 209 IPR001841 -
Pvu6g0186 217 Pfam RING-H2 zinc finger domain 166 209 IPR024766 GO:0008270
Pvu6g0186 217 PANTHER F6A14.12 PROTEIN-RELATED 100 214 - -
Pvu6g0186 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 215 IPR013083 -
Pvu6g0186 217 SUPERFAMILY RING/U-box 162 214 - -
Pvu6g0186 217 SMART ring_2 168 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0186 Pvu-Chr6 8994404 8995057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0186 133 216 C3H Transcription Factor Family AT1G18760 37.209 1.05e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0186 - K22378 pvu:PHAVU_006G017900g 439.499