Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0185 ATGTCGTCGACACTGCATCACTATTACAGTGTTACTAGGGTGAATGAAGAAGACACCACAGTTGTGCCTGGTAATTCTTTCAACTTCGAAATCAAAGTAATGTATCACTCAGCCGATACATTCCCAGATGGGTTACAACATCAACTTTTACCAGCATCAATACTCTCCCAAGATTTCTTTCAAGAGGGTTCAATCTTCTTACAGACAGTGTTGACACTTTCACCCTTCGCCGTTGGATGTCCTGAGGAAATAGCAGAAGGGATTGTTTCTAATGTTCAAGCCATGTTCAGTGTTAACAGCGCTTCTGAATTTCTTGCTTTGGAATCATCCCAGGAATCTCCACAGCGAGTCATCCCTTTAACAGTGGCAATTATAATCTTGAATTATGGAGACCAGGCAGCTAGTGAAGAGTACATGGAGACTTCTAGAAGGAATCAGAGGGTCATTTATAGAAGGAGTCCAAGGCTGAGTGCTAGAGCGAGGCAGCAGCAGAGTTCTAGAATGACTCAGCAGAGTTCTAGAGTGACTCAGCAGAGTTCTAGAATGACTCAGCAGAGTTCTAGAATGACTCAGCAGAGTTCTAGAGTGAGTCAGAGGCCGAGTTCTAGAGTGAATCAGAGGCAGAATTCTGCTGTGACTCATACTTCCGAGGAAGAAGCCATAATAAATACATTTTTGAAGAAATGTACTGTTATAAGAGGACGTGAAGATTGTTGTATCTGCTTGGAAGCTTTGAGTAACAATGCTGAGTGCTACACAATGCCATGCGAACACGCCTTTCATCTTCCATGTATTCTCACATGGCTCAAAACTAGTCATATGTGTCCCTTGTGTCGCTTCTCTGTGTCAACAGCAGGTGAAAATTTGGCAACAGAAGGTGAAAACTTGCCAGCAGCAGCTGAAAACTTGCCAACAACAGCTGCAGAAAACTAG 933 0.4319 MSSTLHHYYSVTRVNEEDTTVVPGNSFNFEIKVMYHSADTFPDGLQHQLLPASILSQDFFQEGSIFLQTVLTLSPFAVGCPEEIAEGIVSNVQAMFSVNSASEFLALESSQESPQRVIPLTVAIIILNYGDQAASEEYMETSRRNQRVIYRRSPRLSARARQQQSSRMTQQSSRVTQQSSRMTQQSSRMTQQSSRVSQRPSSRVNQRQNSAVTHTSEEEAIINTFLKKCTVIRGREDCCICLEALSNNAECYTMPCEHAFHLPCILTWLKTSHMCPLCRFSVSTAGENLATEGENLPAAAENLPTTAAEN* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0185 310 PANTHER OS07G0631200 PROTEIN 151 280 - -
Pvu6g0185 310 ProSiteProfiles Zinc finger RING-type profile. 238 279 IPR001841 -
Pvu6g0185 310 MobiDBLite consensus disorder prediction 136 215 - -
Pvu6g0185 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 287 IPR013083 -
Pvu6g0185 310 SUPERFAMILY RING/U-box 237 284 - -
Pvu6g0185 310 SMART ring_2 238 278 IPR001841 -
Pvu6g0185 310 MobiDBLite consensus disorder prediction 157 215 - -
Pvu6g0185 310 Pfam Ring finger domain 237 279 IPR001841 -
Pvu6g0185 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 151 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0185 Pvu-Chr6 8939715 8940836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0185 237 307 C3H Transcription Factor Family AT5G17600 41.667 1.78e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0185 - - pvu:PHAVU_006G017800g 519.235