Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0184 ATGCCGTCACGACGTAGCCACTATAGCCTGAACAGGGTGAATAATCAACACACCACTGTTGCTCCTGGTGATACTTTCATCCTTCACTCTCAAGTTTTATATTTTCCAATTCGCCCAGGATGGCTAGAGCATCAATTTCCTCCGAGACCAATATCCTCTCAGGATTTCTTTCAAGATGGTCAAAACTTCTTATGCTCAACCTTGTCACATTCACGCTTTGTCATTGATTCTCTTGAAGAAATGTCCCAAAGAATTGTTCATAGTGTTAGACAAATGTTTCAAGTTGGTAGCATTTCTGATTTTCTTTCTTTGGAACCTCAACACCGTGTCATCCCTTTATCGCTGTCAGTTGTAATATTGGATAATGGAATGCATGCAGCAAGGGAAGACTCCAGGCAGACTTTTCAGAGTTCTAGAAGGAATCAGAGGCAGCGTTCTAGAAGGAATCAGAATCAGAGGCAGCCTTCTAGAAGGAATCAGAGACAGAATTCTAGAGTGAATCATATGTCGGAGGAGGCCATAATAAATACCTTTTTGAAGAAATGCACTGTTATGAGAGAAAGTGAAGACTGTTGTATCTGCTTGGAAGAGTTGAATATCAATGCTGAGTGCTACACAATGCCATGCCAGCATGTCTTTCACCTACCTTGTATTCTCACATGGCTCAAAACTAGTAGTGTGTGTCCCTTGTGTCGCTACTCTTTACCAACAACATCTCAAAACTAG 726 0.4146 MPSRRSHYSLNRVNNQHTTVAPGDTFILHSQVLYFPIRPGWLEHQFPPRPISSQDFFQDGQNFLCSTLSHSRFVIDSLEEMSQRIVHSVRQMFQVGSISDFLSLEPQHRVIPLSLSVVILDNGMHAAREDSRQTFQSSRRNQRQRSRRNQNQRQPSRRNQRQNSRVNHMSEEAIINTFLKKCTVMRESEDCCICLEELNINAECYTMPCQHVFHLPCILTWLKTSSVCPLCRYSLPTTSQN* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0184 241 Pfam Ring finger domain 190 232 IPR001841 -
Pvu6g0184 241 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Pvu6g0184 241 SUPERFAMILY RING/U-box 182 237 - -
Pvu6g0184 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 116 237 - -
Pvu6g0184 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 238 IPR013083 -
Pvu6g0184 241 SMART ring_2 191 231 IPR001841 -
Pvu6g0184 241 MobiDBLite consensus disorder prediction 128 167 - -
Pvu6g0184 241 PANTHER OS07G0631200 PROTEIN 116 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0184 Pvu-Chr6 8936075 8936969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0184 174 240 C3H Transcription Factor Family AT1G18760 40.580 7.78e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0184 - - pvu:PHAVU_006G017700g 438.728