Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0170 GTTGTTGGTCCATCATCCTCTATTACTCGTCACCACCATATATCAAGAAAGAAAAAAATTGGTAGGCCCGTAGGTTCTAAGAACAAGCCAAAACCATTACTTGGGATTGACAAAGCCAATCGGAATGTTGTAAAACCCGTTTTCATTGAAGTTCCTGCTAGCTATGATGTGATCAAGACAATTGTTCAATTCGCTCGTCACCACCAAGTTAGCATCGTAGTACTAAACGCATCAACCACTATTTCCAATGTCACTGTTCGTAACACTCATTGTCATGCTTCTTCTTTCACTGTTTATGGACCTTTCAAAAAAAAATTTCTCAACGAAAGATCTTCATCTTTATCATCATCAACCCTAAATATTGACCCTTATTGTTCTTTTAGCATTTCCTTTTCTGGATTTAAAGAACGAAGCTTCATCGGGGGTGTTGGAGGAAAAGTTGTTGCAGAAAATGGGGTAATGGTGGCAGCTATTGTTGTGAAGTGTAACGACAATAATAGATAA 504 0.381 VVGPSSSITRHHHISRKKKIGRPVGSKNKPKPLLGIDKANRNVVKPVFIEVPASYDVIKTIVQFARHHQVSIVVLNASTTISNVTVRNTHCHASSFTVYGPFKKKFLNERSSSLSSSTLNIDPYCSFSISFSGFKERSFIGGVGGKVVAENGVMVAAIVVKCNDNNR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0170 167 MobiDBLite consensus disorder prediction 10 25 - -
Pvu6g0170 167 ProSiteProfiles PPC domain profile profile. 41 167 IPR005175 -
Pvu6g0170 167 MobiDBLite consensus disorder prediction 1 33 - -
Pvu6g0170 167 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 161 IPR014476 GO:0003680
Pvu6g0170 167 Pfam Plants and Prokaryotes Conserved (PCC) domain 45 158 IPR005175 -
Pvu6g0170 167 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 12 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0170 Pvu-Chr6 7913272 7916734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0170 7 157 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 30.058 8.68e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0170 - - pvu:PHAVU_006G016300g 327.791