Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0168 ATGTCCAAATTGCAAGTTCATAACCAGAGACATTCTGTTATCGATGTTACTTCTGCAAAAGAGAACTGGAACATTGTTGTTAGAGTGATACGTTTGTGGTTTGTTACTGATCTTGCTAAATCCAAAATTCCGTTTTCGATAGAGTTGATTTTGCAAGACAAAGAGGGTGTTAGAATACATGGATCGATTAGAAGAACACTAATCTATAAATTTCAAAGTCAGATTTATGATGGCAGTGTGTATTCTGTTCAATCGTTCAGTGTTGCAGCCAACGGTGGTTCCTACAAAACCAAACACCATCCGTATAAAATAAATTTTCAGTTTGGAACAAAGATAACTTCACTTCCTGCACAAATGGTACGAGAATCTCCTCCTGAATACATCCCTCTTTCTTTTATATCTGGTCCTGGATTTGACATTGACTACTTAGATTTATTCTATTATTACAATTTTTTCATCCATGTAGATATTATAGGAGTGCTGACAGGAGTTGGAATTGAAAGAAAGTTGCAAAAAGATGGACGAAAGATAAAACTAAATGTCATCTCCTTAGATTGTGATGGCTTTCATATTGAATGCACGCTTTTTGGAAACTATGTGGATGAGTTGAATGCGTTTCTGTCATCTGCTGAAGTACAAAATGTTGTTGTAAGTATTGAGTTCGGCAAAGTCAAGGTTTTTCAAGATAAGGTTTATATCCAGAACTGCATTGATTGTACCAAGGTACAATTTAATTTGAACACTGAAGCAGCACTTGCTTTGAAAAAAAAAAGGATGTCTTCAAGTAGTGAATCACCTTCTCAGAGACTTTGTCAGCTTTCTGAAGCTTCTGAACACAATTTAGAAGATGAATTCCTTCAACTTACTCCTAGGAACACAATAGAAAGGCTCAAGGACTGCAAAGAGGTAAACACATTCATTATATTGCGCACCATCAAGCACGTTTTCAACGATGATGACTGGTGGTACACTGCCTGCGTTTGTAATAAGGCAGTGTACCAAGATTCAAAGATTTTCTTTTGTGAGAAATGTAACAAGCATGTGATGAAGGTTTCTCTCAGGTATAAGATTAAACTGTGTATTGTTGATGAAACAAATTCAACTACGTTTATTCTTTTCGACAGGGAAGCAAAATTGCTCTTAAATAAGTCATCTGTTGAAATTTTTGAAAGCCATGATAAGAATGGCAATCTTTCGAAAGAGTTTTCAAATCTGTTGGATAAATCATTTTTATTCAAGGTTGACTCAAGAAATGATCAAGGCATTCGATTTGAGTAA 1278 0.3529 MSKLQVHNQRHSVIDVTSAKENWNIVVRVIRLWFVTDLAKSKIPFSIELILQDKEGVRIHGSIRRTLIYKFQSQIYDGSVYSVQSFSVAANGGSYKTKHHPYKINFQFGTKITSLPAQMVRESPPEYIPLSFISGPGFDIDYLDLFYYYNFFIHVDIIGVLTGVGIERKLQKDGRKIKLNVISLDCDGFHIECTLFGNYVDELNAFLSSAEVQNVVVSIEFGKVKVFQDKVYIQNCIDCTKVQFNLNTEAALALKKKRMSSSSESPSQRLCQLSEASEHNLEDEFLQLTPRNTIERLKDCKEVNTFIILRTIKHVFNDDDWWYTACVCNKAVYQDSKIFFCEKCNKHVMKVSLRYKIKLCIVDETNSTTFILFDREAKLLLNKSSVEIFESHDKNGNLSKEFSNLLDKSFLFKVDSRNDQGIRFE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0168 425 CDD RPA1_DBD_C 306 421 IPR013955 -
Pvu6g0168 425 Gene3D - 9 114 IPR012340 -
Pvu6g0168 425 SUPERFAMILY Nucleic acid-binding proteins 14 116 IPR012340 -
Pvu6g0168 425 CDD RPA1_DBD_A_like 25 112 - -
Pvu6g0168 425 Gene3D - 149 258 IPR012340 -
Pvu6g0168 425 Gene3D - 259 424 IPR012340 -
Pvu6g0168 425 CDD RPA1_DBD_B_like 156 256 - -
Pvu6g0168 425 Pfam Replication factor-A C terminal domain 310 419 IPR013955 -
Pvu6g0168 425 Pfam Domain of unknown function DUF223 48 114 IPR003871 -
Pvu6g0168 425 SUPERFAMILY Nucleic acid-binding proteins 289 415 IPR012340 -
Pvu6g0168 425 PANTHER REPLICATION FACTOR A 1, RFA1 18 384 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pvu6g0168 425 SUPERFAMILY Nucleic acid-binding proteins 153 256 IPR012340 -
Pvu6g0168 425 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 18 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0168 Pvu-Chr6 7799324 7801355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0168 2 414 Core DNA Replication Machinery Family AT5G08020 21.940 7.50e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0168 - - vun:114165619 502.671