Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0163 ATGGCTTTCACAGTAGAGAGGTTTGAGGAGAACATGGTGTTCTCTTTTGAGACTCAGAAGTCAGTGCCAGCACCTTTCCTCACAAAGACATATCAGCTAGTTGAAGATCCTCTCACTGACCACATTGTTTCATGGGGTGAAGATGACACTACATTTGTTGTGTGGAGACCCCCTGAGTTTTCCAGAGATCTTCTTCCCAATTACTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCGAATGAGTACTTCAAAAAAGGAGCTAAGCACCTTTTGTGTGAAATACACAGAAGGAAAACACCTCAGCTACATCACCAACTCTACCATGACCAACCACCATCCCAGATTCTTCAACAAGATGAAAGTCTCTGCTGGCTTGACACTCCACTTTCATCTCCAAAATCAAGCACAGACATTCTAACAGCCCTTTCCGAAGACAACCAAAGACTAAGGAGAAAGAACTTCATGCTCTTGTCAGAACTTAGTCACATGAAGAGTTTGTACAATGACATAATATATTTCATCCAAAACCATGTAAAAGCACCACCCTTTGAACAAAGAACCAGCAGTGCCATTCAAAAGCTGGTGGAGTTTGACTCTTTGAATGAGCCTATAAATAACATAAGTCTCAGAACTTCAAAAAGTAGTTTTGTGGATAAATCCTTCTTCACATCTACTGAAGAATCAGACAGTTCTGTGAAGCTCTTTGGGGTCCTTCTAAGTGGCAGAAAGAGATTGCACCCAGATAACATCAATTGA 810 0.4123 MAFTVERFEENMVFSFETQKSVPAPFLTKTYQLVEDPLTDHIVSWGEDDTTFVVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGAKHLLCEIHRRKTPQLHHQLYHDQPPSQILQQDESLCWLDTPLSSPKSSTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKAPPFEQRTSSAIQKLVEFDSLNEPINNISLRTSKSSFVDKSFFTSTEESDSSVKLFGVLLSGRKRLHPDNIN* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0163 269 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 10 265 - -
Pvu6g0163 269 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Pvu6g0163 269 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0163 269 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0163 269 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0163 269 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0163 269 Gene3D - 17 117 IPR036388 -
Pvu6g0163 269 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 265 IPR027725 -
Pvu6g0163 269 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pvu6g0163 269 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0163 Pvu-Chr6 7459944 7461399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0163 20 264 HSF AT1G46264 51.195 2.08e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pvu6g0163 HSF_DNA-bind 1.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0163 K09419 - gmx:100806150 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0163 6 7459944 7461399 Pvu6g0163 6 7459944 7461399 ECH
Pvu6g0163 6 7459944 7461399 Pvu8g2097 8 51238104 51239527 PCT