Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0159 ATGGGCAACTGTTGCTCTCAAGGCAACGCTGCCGATGGCCCGGCTGACAACACCGCGGCAGATGACAAGGGAGAAACCAACCAACAAACTAATAATCATTCAAACAACAATAATAATAATGAAGATAATTCTGCCACAAACCCTACCACCCCACCGGCATCCTCACCACCACCTACAGTCACACCACCTCCTTCAAAATCCATAAAACCGTCCGCCATGGGCCCTGTCCTACAGCGGCCCATGGAGGATGTGAGAGCAGCCTACACCATTGGGAAGGAGCTAGGGAGAGGCCAATTTGGTGTCACACATTTGTGCACAGACAAAACAACTGGTGAACAATTTGCATGCAAAACCATTGCCAAGAGGAAGCTTGTGAGTAAAGAGGATATAGAGGATGTGAGAAGAGAGGTGGAAATCATGCTCCACCTCTCACAGCAACCTAACATTGTGGAGCTCAAAGGTGCCTATGAGGATAAACAATCGGTGCATTTGGTGATGGAGCTTTGTGCTGGTGGTGAACTTTTCGATCGTATCATTGCTAAGGGACATTACACTGAACGCGCTGCAGCTTCTTTGCTCAGAACCATTGTGCAGATTGTTCATACCTTCCATTCCATGGGTGTCATTCACAGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAAAATGCACCCCTCAAAGCCACGGATTTTGGTCTATCCGTTTTCTTCAAAGAAGGAGAGACGTTCAAAGACATTGTTGGAAGTGCATATTACATTGCTCCTGAGGTTTTGAAGAGGAAATATGGGCCTGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATCTGGTGTTCCTCCATTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATCCTAAGAGGCCACATTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCAGCAAAGGATCTTGTAAGTAACATGTTGAATTCAGATCCTGCAGAAAGACTAACAGCAGCCCAAGTTCTAAATCATCCATGGATCAAGGAGGATGGAGAAGCACCGGATAAACCACTTGACAATGCTGTACTGAATAGGCTCAAACAATTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGGTGTCTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAAGGGCATGGACACTGACAACAGTGGAACCATCACAATTGAAGAGCTCAAACAAGGACTTGCAAAGCAAGGGACAAAGCTAACAGAACAAGAAGTTAAGCAGTTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATAGATTACGACGAGTTCATCACGGCAACGATGCAGATGAACCGAATGAACAGAGAAGAACATCTTTACACAGCTTTCCAATACTTCGATAAAGATAATAGCGGGTTCATTACCACAGAAGAACTAGAACAAGCTCTCCATGAGTTTAACATGCATGATGGCAGGGACATCAAGGAAATCCTTCAAGAAGTTGATGGAGATAATGATGGGCGAATTAACTATGATGAGTTTGTGTCAATGATGAAGAAAGGAAATCCAGAAGCTGCAACTAAGAAGAGGCGTGATTCAATGCCTTTGCCATAG 1635 0.4416 MGNCCSQGNAADGPADNTAADDKGETNQQTNNHSNNNNNNEDNSATNPTTPPASSPPPTVTPPPSKSIKPSAMGPVLQRPMEDVRAAYTIGKELGRGQFGVTHLCTDKTTGEQFACKTIAKRKLVSKEDIEDVRREVEIMLHLSQQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLSGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISPSAKDLVSNMLNSDPAERLTAAQVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMQMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALHEFNMHDGRDIKEILQEVDGDNDGRINYDEFVSMMKKGNPEAATKKRRDSMPLP* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0159 544 ProSiteProfiles EF-hand calcium-binding domain profile. 500 531 IPR002048 GO:0005509
Pvu6g0159 544 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Pvu6g0159 544 MobiDBLite consensus disorder prediction 21 49 - -
Pvu6g0159 544 ProSitePatterns Protein kinases ATP-binding region signature. 94 121 IPR017441 GO:0005524
Pvu6g0159 544 Gene3D Phosphorylase Kinase; domain 1 89 173 - -
Pvu6g0159 544 Gene3D Transferase(Phosphotransferase) domain 1 174 353 - -
Pvu6g0159 544 Pfam EF-hand domain pair 394 454 IPR002048 GO:0005509
Pvu6g0159 544 Pfam EF-hand domain pair 463 526 IPR002048 GO:0005509
Pvu6g0159 544 MobiDBLite consensus disorder prediction 1 78 - -
Pvu6g0159 544 CDD STKc_CAMK 88 345 - -
Pvu6g0159 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 534 - -
Pvu6g0159 544 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 31 534 - -
Pvu6g0159 544 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Pvu6g0159 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Pvu6g0159 544 SMART efh_1 429 457 IPR002048 GO:0005509
Pvu6g0159 544 SMART efh_1 500 528 IPR002048 GO:0005509
Pvu6g0159 544 SMART efh_1 465 493 IPR002048 GO:0005509
Pvu6g0159 544 SMART efh_1 393 421 IPR002048 GO:0005509
Pvu6g0159 544 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Pvu6g0159 544 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
Pvu6g0159 544 ProSiteProfiles Protein kinase domain profile. 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0159 544 SMART serkin_6 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu6g0159 544 SUPERFAMILY EF-hand 386 526 IPR011992 -
Pvu6g0159 544 MobiDBLite consensus disorder prediction 50 69 - -
Pvu6g0159 544 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Pvu6g0159 544 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Pvu6g0159 544 SUPERFAMILY Protein kinase-like (PK-like) 71 374 IPR011009 -
Pvu6g0159 544 Gene3D - 354 530 - -
Pvu6g0159 544 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Pvu6g0159 544 Pfam Protein kinase domain 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0159 Pvu-Chr6 7353127 7356985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0159 1 539 EF-hand Containing Proteins AT5G12180 78.479 0.0 878
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pvu6g0159 Pkinase 1.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0159 K13412 - gmx:100775885 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0159 6 7353127 7356985 Pvu8g2091 8 51206612 51209875 PCT