Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0145 ATGGCAGCATGCTTGAATCCTCCTAGGCTATCTAGCACTGAAGATGACTCTGTGATACTCTTCTCAACTTCTAATTCTCCTCAAGACTCCATTAGTCCTTCTTCTTCCTCTTTCCACCATTCACCGCCACCATCACTACATCAATTCAGAACTGCATATAAACTTTCTGTGAGAAATCTCTCCTACACTTTGCAGCCTTACAAGACCACTTCCTTTTCATTTTGTCACCAGAGTAAAACACCAGAGCCCTTAAATATACTCAACTCAATCTCTTTTGTCACCAGAAGTTCTGAGATTGTTGTTGTCGCTGGTCCTAGTGGAACAGGAAAGTCTACCCTTCTGCGAATCATGGCAGGAAGGGTAAAAGATGAAGAATTTGATCCTAGAAGTATTTCAATCAATGATCTGCCTATGACTAGTCCAGCTCAGTTGAGGAAGATATGTGGCTTTGTGGCACAAGAGGACAATTTGCTTCCTATGCTGACTGTGAGAGAAACTTTGTTGTTTAGTGCAAAGTTTAGGCTAAAAGAAATGACACCAAAAGACAGAGAGTTGAGGGTAGAAAGCTTGTTGCAAGAGCTAGGACTTTTACATGTTGCACATAGTTTTGTTGGGGATGAAGAGAATAGAGGAATATCTGGTGGAGAGAGGAAAAGGGTGTCAATTGGAGTTGACATGATTCACAATCCTCCAATTTTGCTCCTAGATGAACCAACTTCAGGTCTGGACAGCACTTCAGCCTTGCAAGTCATAGAGTTACTGTCATCAATTGTTAAAGCAAAGCAAAGGATAGTGGTTCTTTCAATCCACCAACCCAGCTATAGAATATTGCAGTATGTTTCCAAGTTCTTGATCCTCTCTCATGGTTCAGTTGTTCACAATGGTAGCCTAGAACAACTAGAGGAAACCATAAGTAAACTGGGATTTCAAATTCCAACACAGCTGAATGCTTTAGAATTCTCTATGGAAATTATACGACGGTTGGAAGATTCCGGTTCCATGTATGAAACTTCCATAATTGAGGAAAAGGAGCCATTTCCACACCTCATGTGGCCAGAGGAAGAAAACTGTGGAATCCAAATTGCCCAATCACAATGTACCAAGGAAAGTTTTAGCAGTCTTTGTTATGCATACTTGATAGAGATACTGTTTTTGTGCTCAAGATTTTGGAAGATCATTTATAGAACAAAACAACTTTTCTTGGCCAGAACATTGCAAGCACTAGTTGGTGGCTTTGGTCTAGGAAGTGTTTATGTAAAGATAGGAAGGGATGAAGGAGGAGTTGCAGAAAGGGAACTCCCTCATCTGCACAGTTCTTGGAGCCTTCTTCCTCTTCTCAGGATACTTCATTCCAAAGGAAAGCATCCCAAAGTATTGGCTTTTCATGTACTACGTGTCCCTCTATAG 1407 0.4101 MAACLNPPRLSSTEDDSVILFSTSNSPQDSISPSSSSFHHSPPPSLHQFRTAYKLSVRNLSYTLQPYKTTSFSFCHQSKTPEPLNILNSISFVTRSSEIVVVAGPSGTGKSTLLRIMAGRVKDEEFDPRSISINDLPMTSPAQLRKICGFVAQEDNLLPMLTVRETLLFSAKFRLKEMTPKDRELRVESLLQELGLLHVAHSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALQVIELLSSIVKAKQRIVVLSIHQPSYRILQYVSKFLILSHGSVVHNGSLEQLEETISKLGFQIPTQLNALEFSMEIIRRLEDSGSMYETSIIEEKEPFPHLMWPEEENCGIQIAQSQCTKESFSSLCYAYLIEILFLCSRFWKIIYRTKQLFLARTLQALVGGFGLGSVYVKIGRDEGGVAERELPHLHSSWSLLPLLRILHSKGKHPKVLAFHVLRVPL* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0145 468 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524
Pvu6g0145 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 306 IPR027417 -
Pvu6g0145 468 MobiDBLite consensus disorder prediction 22 44 - -
Pvu6g0145 468 SMART AAA_5 96 298 IPR003593 -
Pvu6g0145 468 MobiDBLite consensus disorder prediction 22 45 - -
Pvu6g0145 468 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 443 - -
Pvu6g0145 468 Pfam ABC-2 type transporter 270 330 IPR043926 GO:0140359
Pvu6g0145 468 Gene3D - 68 337 IPR027417 -
Pvu6g0145 468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 55 313 IPR003439 GO:0005524
Pvu6g0145 468 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 3 443 - -
Pvu6g0145 468 Pfam ABC transporter 87 240 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0145 Pvu-Chr6 6887182 6889301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0145 84 300 Calmodulin-binding Proteins AT2G36910 27.706 1.48e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0145 K05681 - pvu:PHAVU_006G013900g 813.913