Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0144 ATGACAAACAACTCCACGACAATCTCCATCTCCCAAATCTCCATATCCGAAGAGTCAGATTCTGAATCCTCTTGGGAGCACAACACTAACTTCTCCCATTTTCCTCATCTTCCATCACTACCACCACCTTCCACAAACCAACACTGGGAGAATCTCCCTCTTACCACTCCACCCTCCAAGAAGCCACGTGGCAGACCCCCAGGCTCCAAGAACAAGCCCAAGCATAGTATGCCACAACCCCCCATGAAGATTCTCATAGTTAATGTCGCTCCAGGACATGACATCATTGAGACCATTCTTCACATAGCTCGTCGATCTCATGTCAGCCTCACCATCCTAAGTGCTTCCGGTACTATCACCACCGTCACCCTCCGCCATGTCCCCACTGGTTCCTCCGCCGTCATGCTCCATGGACCCTTCAACTTGCTCTCCCTCACTGGCTCCTACTTATACAACAACCAATACACTCTTCTCCCTGGAGCCACTCCTCCTCGTTCCTTGTCTTTTGGGATACATCTCTCCACCTCTAATGGTCGAGTCTTCGGTGGCCTCGTCGGTGGTAGAGTTGTTGCCGGTAACGATGTCAACTTGACCATTTCTACCTTCAAGAACCCTGAAATTTACAAATATGTTCCTCAAGGTATACAAGGGAATGATCATGATCATGATGATACCATCAACAACAATAACAACAAAACTTTTAACCATAACTCTAATAATTTCAACACAAGTGGCGAAATGTTCAACGGTGCTGGTTTTGGAATGCGTGGAGGTGAATGA 780 0.4744 MTNNSTTISISQISISEESDSESSWEHNTNFSHFPHLPSLPPPSTNQHWENLPLTTPPSKKPRGRPPGSKNKPKHSMPQPPMKILIVNVAPGHDIIETILHIARRSHVSLTILSASGTITTVTLRHVPTGSSAVMLHGPFNLLSLTGSYLYNNQYTLLPGATPPRSLSFGIHLSTSNGRVFGGLVGGRVVAGNDVNLTISTFKNPEIYKYVPQGIQGNDHDHDDTINNNNNKTFNHNSNNFNTSGEMFNGAGFGMRGGE* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0144 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 207 - -
Pvu6g0144 259 MobiDBLite consensus disorder prediction 1 35 - -
Pvu6g0144 259 ProSiteProfiles PPC domain profile profile. 79 223 IPR005175 -
Pvu6g0144 259 CDD DUF296 83 192 IPR005175 -
Pvu6g0144 259 MobiDBLite consensus disorder prediction 1 80 - -
Pvu6g0144 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 203 IPR005175 -
Pvu6g0144 259 Gene3D - 82 228 - -
Pvu6g0144 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 233 IPR014476 GO:0003680
Pvu6g0144 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 7 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0144 Pvu-Chr6 6843192 6843971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0144 60 209 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.669 6.67e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0144 - - pvu:PHAVU_006G013800g 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0144 6 6843192 6843971 Pvu6g0144 6 6843192 6843971 ECH