Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0138 ATGAAGAGACTCAATAACTCAAACACTATGGCTACTTCCCTTTCCATGTGCCCATCAAAAGGTTTGAATGAGAGGATGGAAACTCAGGGCTACAGTGAAGAGTTTAAAGCAATGTTAGATAGACTAGACCAAGAAGACAGCTATGAAGATTGTAGCTTAGTATTGGAGAAGAAAAGGAGGCTGAGTCTTGACCAGGTGAAGGCCTTAGAGAGAAACTTTGAACTGGACAACAAGCTAGAGCCAGAGCGCAAGTCCAAGCTTGCTCAACAACTAGGCCTTCAACCAAGACAAGTTGCTATTTGGTTCCAAAATCGTCGAGCTCGTTGGAAAACCAAGCAATTGGAGAGAGATTATGGCATTCTCAAGTCCAATTATGATGTTCTCAAGGTTGAGTACAATAATCTTGAGCAAGACAATGAGGCTCTCACTGTTCAGGTAAGTGAATTGAAAGAAAAGTTGTTGAGAGGTAAAGCTGAAAACAATGAGTCAATAAAAGAAGAGTCTCCCATTTCAAAGGTAAGAGACGGAGTAGCATCAGAGAGCAATTCAAATGGTGTGGTTAAGGAAGAAAACAACATTGATTCTACTTTTTGTGTGAATGGATCTTTGCCCAGCTCAAGACCAGTACTTCAATACTCTGATTCAAGAGGGTCACCAGATAAAAATTTTCAGACTCAGTTTATGAGAATGGAGGAGCAGAATTTCTTTAGTATCAATGAGTTCTGTTTCTTTTCAGTTGATCAATCCCCTACCCTGTAA 759 0.4018 MKRLNNSNTMATSLSMCPSKGLNERMETQGYSEEFKAMLDRLDQEDSYEDCSLVLEKKRRLSLDQVKALERNFELDNKLEPERKSKLAQQLGLQPRQVAIWFQNRRARWKTKQLERDYGILKSNYDVLKVEYNNLEQDNEALTVQVSELKEKLLRGKAENNESIKEESPISKVRDGVASESNSNGVVKEENNIDSTFCVNGSLPSSRPVLQYSDSRGSPDKNFQTQFMRMEEQNFFSINEFCFFSVDQSPTL* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0138 252 Gene3D - 56 119 - -
Pvu6g0138 252 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Pvu6g0138 252 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Pvu6g0138 252 MobiDBLite consensus disorder prediction 160 186 - -
Pvu6g0138 252 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 183 - -
Pvu6g0138 252 SMART HOX_1 55 116 IPR001356 GO:0003677
Pvu6g0138 252 Coils Coil 118 159 - -
Pvu6g0138 252 CDD homeodomain 57 113 IPR001356 GO:0003677
Pvu6g0138 252 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Pvu6g0138 252 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Pvu6g0138 252 SUPERFAMILY Homeodomain-like 57 124 IPR009057 -
Pvu6g0138 252 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Pvu6g0138 252 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Pvu6g0138 252 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 183 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0138 Pvu-Chr6 6636322 6637809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0138 1 153 Homeobox Transcription Factor Family AT2G22430 54.140 1.15e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu6g0138 Homeodomain 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0138 K09338 - qsu:111985016 266.544