Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0125 ATGCTCCCTCTGCGTTCGCAATCACAGGTTGGAGGACTACAAACATCGCTGTCTCTTGTTTCCTCAGACCCTGTTCTGTCTCCTGATGAACCTAGATCAAACTCTGACAATATCCGTGAATCTCCGGCTGAAAGTGCAAGTTCCCAAGAAACATGGCCTACAGCTGATGCACCTACCACCAAGAAGACGGAGAATGGAAAAGCAGAGATTAATTGCCTTGAGCAGAAAGTGATTCACCGTGTTTCTAGTGCAGACAAAGTTACTCTTCAGGACATTGCCAGAGAAAGTGTCGGTACAATATGTGAAAAAATGCATCGTCTACCCGAGGAATATCTAGAAGAGCTGAAGAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGTTCGCAGCATAGAGAAGAATTTTTCATTTTGCAGAAGTTTGTTCAGGGTAGAACTGATTTGACAGCCAAGACACTGGTCAGAGCACATCGAGTGCAACTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTTTCACAGAATTCCCTGATTGAGATCTTTGGCTATAAGAGATGCAGAAACATAGCGTGCCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCAACAACACTAGTGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAGGTGAATACATGCCGCTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTCAGCAACTTATTTGCATGGGCCCTTCTTCAAAGAGCGGGGCAGGACCTAGTGAAATGGTTTTCCGGTGTCAAGCTTGCAATAGGACATCAGAACTGTTGGGTTGGGTTAAAGACGTCTTCCAGCACTGTGCGCCGTCATGGGATGGAGAGGCCTTAACGAGGGAACTTGATTATGTTAGCAGAATATTTCACGGGAGTAAAGACCCTCGAGGAAGGAAGTTGTTTTGGAAGTGTGATGATTTGAAGGAAAAATTGAAAAGTAAAAAAATAGATTCAAAGGCTGCTTGCAGGGCAATTTTGATATTTTTCCAAGAGCTTGAGGTGGACTCTGCAAAAGGCTTGGAAAATGGAGAAAGTGGAAGGTTGATTGCTCCACAGGATGCATGCAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAGATGGAAATAGTAGCTGATGAGAAGATGAGGATGTTTAAGAAGGCTCGCATGGCCCTCGAAGCTTGTGATCGTGAACTAGCTGACAAGTACAGGGAAGTGGCAGAGTTGAAGATGGAGAGGCAGAAAAGGAAGGTACAGATAGAAGAGCTGGAGAAAATTGTGAGGCTAAAAAATGCGGAGGCTGATATGTTCCAATTGAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTTCAGAGGATTGCTCTTGCCAAGCAAGATAAATCAGAGGAAGAATTTACTAGCAACTACCTGAAACAACGATTAAACGAAGCCGAGGCTGAGAAACAGTATCTCTACGAGAAGATCAAATTGCAGGAGACTTCTCGTGCTTCGCAGAGCAGTAATGGTGGTGACCCCTCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTGTACAGTGCTCCTCCCAAACCAGACACTCAGGGCCACCCTTTTCGGACAAATCCCTGA 1695 0.4454 MLPLRSQSQVGGLQTSLSLVSSDPVLSPDEPRSNSDNIRESPAESASSQETWPTADAPTTKKTENGKAEINCLEQKVIHRVSSADKVTLQDIARESVGTICEKMHRLPEEYLEELKNGLRVILEGGNGSQHREEFFILQKFVQGRTDLTAKTLVRAHRVQLEILVAINTGIQGFLHPSISLSQNSLIEIFGYKRCRNIACQNQLPADDCTCEICNNTSGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRQQLICMGPSSKSGAGPSEMVFRCQACNRTSELLGWVKDVFQHCAPSWDGEALTRELDYVSRIFHGSKDPRGRKLFWKCDDLKEKLKSKKIDSKAACRAILIFFQELEVDSAKGLENGESGRLIAPQDACNRIAEVVQEAIRKMEIVADEKMRMFKKARMALEACDRELADKYREVAELKMERQKRKVQIEELEKIVRLKNAEADMFQLKANEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQETSRASQSSNGGDPSQMLMYSKIHDLLYSAPPKPDTQGHPFRTNP* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0125 564 MobiDBLite consensus disorder prediction 1 67 - -
Pvu6g0125 564 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Pvu6g0125 564 SMART PHD_3 225 285 IPR001965 -
Pvu6g0125 564 Pfam Coiled-coil region of Oberon 413 546 IPR032535 -
Pvu6g0125 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Pvu6g0125 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Pvu6g0125 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Pvu6g0125 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Pvu6g0125 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Pvu6g0125 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Pvu6g0125 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Pvu6g0125 564 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Pvu6g0125 564 PANTHER PROTEIN OBERON 2 1 556 - -
Pvu6g0125 564 PIRSF UCP025218 2 550 IPR004082 -
Pvu6g0125 564 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 556 IPR004082 -
Pvu6g0125 564 MobiDBLite consensus disorder prediction 519 564 - -
Pvu6g0125 564 Coils Coil 456 488 - -
Pvu6g0125 564 Coils Coil 419 453 - -
Pvu6g0125 564 MobiDBLite consensus disorder prediction 519 535 - -
Pvu6g0125 564 MobiDBLite consensus disorder prediction 1 66 - -
Pvu6g0125 564 CDD PHD_OBE1_like 225 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0125 Pvu-Chr6 6171980 6175189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0125 195 297 PHD Gene Family AT5G57380 32.692 8.47e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0125 - - gmx:100781890 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0125 6 6171980 6175189 Pvu6g0125 6 6171980 6175189 ECH