Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0109 ATGACAAGGAAGAAGGTGGATCTGACATATATAAAGAATGATTCAAAGAGGAAGACAACACTAAGCAAAAGGAAAAATGGTTTAGTGAAGAAGATTAATGAAATCAACATCCTTTGTGGGATTGAAGCATGTGCTATAATTTACACTCCAGATAATCCTCAGCCAGAGGTTTGGCCATCTGAAAGTGGAGTCCAGAGTGTTCTTTCCAGGCTTAGGGGAGTGTCTGAACTGGAGAAAGGCAAGAAAAAGTTGTGTCAAGAGAGCTTTTTGAGGCAGAGGATCATCAAAGCCCAAGCACAACTGAGGAAATTGAGGAATGAAATAAGGAAGAAGGAGGTGACCCTTCTCATGTTTCAATACCTCAATGCTAAGAACAATTTTGACAATTCAAGAATGATTGATCTCAATGATATCTCAAACTTGATTGATCAAAACTTGGAGAAAATAGAAAACTATATCAGTATAAGCCAAGCCCAAAAGGTGAAACCTTTTGTTGACAATGGAGGAGAAACCATGAGTTCATTTGTGAATCATGTCAAAGGGTATGAGACCAATGTAGAGGCCATTCAAAATGATGTTTTGTCTATGGACCTTATCAATGACAATGGTGATGAGATAAAACCATAG 627 0.3796 MTRKKVDLTYIKNDSKRKTTLSKRKNGLVKKINEINILCGIEACAIIYTPDNPQPEVWPSESGVQSVLSRLRGVSELEKGKKKLCQESFLRQRIIKAQAQLRKLRNEIRKKEVTLLMFQYLNAKNNFDNSRMIDLNDISNLIDQNLEKIENYISISQAQKVKPFVDNGGETMSSFVNHVKGYETNVEAIQNDVLSMDLINDNGDEIKP* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0109 208 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pvu6g0109 208 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Pvu6g0109 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu6g0109 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu6g0109 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu6g0109 208 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 157 - -
Pvu6g0109 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu6g0109 208 Coils Coil 87 114 - -
Pvu6g0109 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Pvu6g0109 208 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Pvu6g0109 208 PANTHER MADS BOX PROTEIN 2 157 - -
Pvu6g0109 208 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0109 Pvu-Chr6 5191591 5192398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0109 1 155 Type I MADS-box Gene Family AT5G48670 50.323 8.16e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu6g0109 SRF-TF 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0109 - - var:108319985 347.436