Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0102 ATGGCGCACAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTTCCGATTATCTGCGAATCCTGCCTCGGCGACAGCCCATACGTTCGAATGACCAGAGCAGAGTATGACAAGGAGTGCAAGATATGTACACGGCCATTCACTGTTTTTCGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAAACATGCAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATACGGACTACCAGTTCAAGTTCGGGACACTGCTCTGAGTATTGATTCCAATGATGCCATACCAAAGAGCGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCGTAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTACGGTAAAGTACACCCAAATGATACTATCATGAAGCTTCAAAGGACAACACCGTATTACAAGAGAAACCGAGCACATGTTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAGTGCCCTTATCGACATGAGATGCCAGTTACTGGGGAGTTGTCTCAACAAAATATTAAAGATCGTTATTATGGAGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGGCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTCACGGAGCAGGATTTACGGGATAACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGGGAAGGTGCAGAAAAAGCAGCAGAAGAACTCTCCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGAACTCAAAACCTGAGTCTGACGGTTCTGATCAAGCAAGGCAGCAGGCTTCTGTAGCTCACAGTGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGCTTTACTATAACAATCCACTACCTCCTCAGCAGGAAAGAAGCTACTACCCATCAATGGACCCTCAAAGAATGGGTGCTCTTATTCCATCCCAAGATGGTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAGCTTAGTTTGGAAAAGCAGCAGATGCAACATTATCCCCACTCATTGATGCCTCCTCCACCTGGTCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCTCCAGCTACCCCTTATCATCATCAGTATCCACCTCCATACAATGCTGCTGGGCCTCCACCACAGCCACCAGCTGCAAGTCATCCTTATCAGCATTCTATGCAGCCAGGGTCTGGACAGGCTGCAACTGCCCCAGCTGAAACTGGAACATCAACTTCAGGGCCTCAGCAGCAATAA 1443 0.4705 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKVHPNDTIMKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQNSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPLPPQQERSYYPSMDPQRMGALIPSQDGPPGGPSGSGENKLSLEKQQMQHYPHSLMPPPPGQYHHQYYPPYGYMPPATPYHHQYPPPYNAAGPPPQPPAASHPYQHSMQPGSGQAATAPAETGTSTSGPQQQ* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0102 480 MobiDBLite consensus disorder prediction 299 321 - -
Pvu6g0102 480 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 464 IPR039171 GO:0003723
Pvu6g0102 480 SUPERFAMILY RNA-binding domain, RBD 222 310 IPR035979 GO:0003676
Pvu6g0102 480 MobiDBLite consensus disorder prediction 343 360 - -
Pvu6g0102 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Pvu6g0102 480 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Pvu6g0102 480 MobiDBLite consensus disorder prediction 428 480 - -
Pvu6g0102 480 SMART rrm1_1 229 297 IPR000504 GO:0003723
Pvu6g0102 480 MobiDBLite consensus disorder prediction 428 449 - -
Pvu6g0102 480 Gene3D - 212 310 IPR012677 -
Pvu6g0102 480 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Pvu6g0102 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Pvu6g0102 480 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Pvu6g0102 480 CDD RRM_RBM22 227 300 - -
Pvu6g0102 480 MobiDBLite consensus disorder prediction 343 388 - -
Pvu6g0102 480 Pfam Torus domain 136 194 IPR032297 -
Pvu6g0102 480 MobiDBLite consensus disorder prediction 450 480 - -
Pvu6g0102 480 MobiDBLite consensus disorder prediction 304 320 - -
Pvu6g0102 480 Gene3D - 148 207 - -
Pvu6g0102 480 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0102 Pvu-Chr6 5033868 5038095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0102 217 411 C2H2 Transcription Factor Family AT2G19380 25.688 9.28e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0102 K12872 - gmx:100779917 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0102 6 5033868 5038095 Pvu8g2918 8 58860454 58864093 PCT