Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0101 ATGGTTGATCAGCAAATTATCGGTGTTGTTGCTTCAGTTGTATCATCTAAAAGATATGACGTGTTTCTAAGCTTTCGAGGTGAGGACACCCGGAAGAAATTCACAAGCCATCTCTATGATGCTTTGAAGCAAAAGGAAGTTGAAACCTTTATCGACTATCGTCTTGAAAAGGGAGAGGAGATCTCAACAACTCTCACCCAAGTAATTGAAGATTCCCATATATCTATTGTGATCTTCTCAGAGAACTATGCTTCCTCAAAGTGGTGCTTGGGTGAACTCAGCAAGATTATGGAATGTAAGAAAGAAAAAGGACAGATTGTGATTCCAGTGTTCTATGACATAGATCCATCCCATGTAAGGAAGCAAACTGGAAGCTATGAGAAATTTTTTGTAACTCATAAGGGAGAACCCATGTGCAACAAATGGAAAGCTGCTCTCACTGAAGCAGCCAATTTAGCTGCATATGACTCTCAAACTTACAGGGTTGAATCTGAACTCATTAAGGATATTGTTGAAGATGTTTTGCAAAAAATGGCTGCTATATACCCAAACTGCCACAAAGGATTGGTTGGAATTGAGGAAAAGTATGAAAAGATTGAGTCATTGCTAAAAGTTGGGTCAAATGAAGTTAAAATCTTGGGAATATGGGGCATGGGTGGAATAGGTAAAACCAGCCTTGCTCGTGCTTTATATGAGAAACTATCTGGCGAATTTGAAGGTCATTGCTTCCTCGAAAATGTAAGGGAAGAATCAGACAAGCACGGAGAAAAAGCTTTACGTAATAAACTTTTTTCTGAGTTGTTAGGGAATAAAAATCATTGTTATGATGCAGGCTTTTCAGTAACCCAGTTTGTTTTGAGTAGGCTAGGACGCAAAAAAGTTTTCGTAGTCTTGGATGATGTGGCTACCTCAGAGCAATTAGAAAATCTAATTGAAGATTTTGATTTCTTGGGACTCGGAAGTAGAGTCATTGTTACAAGTAGAAACAAGCAAATATTTAGCCAAGTTGATAAAATATATGAAGTAAAGGAATTGAGCTTTCATCACTCTCTTCAACTTTTCAGTTTGACTGTTTTTAGAGAGAAGCAACCTAAACATGGATATGAAGAAGTATCAAGAAGAGCAACTTTCTATTGCAAAGGTGTTCCTTTGGCTTTAAAAGTTCTTGGTGCAAGTCTTGGTTCAAGAAGTAAGGCAGCATGGGAATGTGAATTGAGAAAACTCCAAAAGTTTCCAAATAAGAAAATTCATAGTGTATTAAAATTAAGTTATGATGGCTTAGATCACTCTCAAAAGGACATATTTCTAGACATTGCATGCTTCTTTAGAGGAAACCAGAGAGATCGTGTAACAAACATATTGGAAGCGTTTGATTTTTCTGCAATATCTGGGATAGAAGTCCTTCTGGATAGAGCTCTAATAACAATTTCAGGTGCCAATCAACTAGAAATGCATGACTTGATACAAGAAATGGGTTGGGAAGTTGTTCATCAAGAATGTATCAAAGACCCTGGAAGAAGAACTCGGTTGTGGAAACATGAGGAAGTGCATGATGTTTTCAAATATAACAGGGGAAGTGAAGTTACCGAAGGCATAATTTTAGATTTGTCTAAATTAATTGAGGATCTCTATTTGAGCTCTGATTTCCTGGCAAAGATGAGTAACGTGAGATTTTTCAAAATCCATAGTTGGAGCAAGTTTAACATATTTAATGTGTATCTTCCTAATGGTCTCAATACATTGTCTCATAAAATGAGGTACCTTCATTGGGATGGATTCTGTCTTGAGTCTTTGCCATCTAACTTCTGTGCTGAACAACTTGTAGAGCTTTGCATGCGTTGTACCAAGCTTAAAAAGCTTTGGGATGGTGTTCAGAACCTTGTGAATTTGAAGACAATTGACCTTTGGGGATCCCGAGACTTGATTGAGATTCCAGACTTATCCAAGGCGAAAAAACTTGAAAATGTTTCTCTTTGCTATTGTGAAAGCTTGTGTCAAGTCCAAGTCCATTCAAAATCTCTTCGTGTACTAAACCTCTACGGTTGTTCATCACTCAGGAAATTTTCAGTGACATCAGAGGAACTGACAAGATTGAGCTTAGCTTTCACCGCTATATGCTCAATACCATCATCAATTTGGCACAAAAGGAAGCTTCAAGCTCTTAATCTAACGGGGTGTTGCAATCTCCAAGAGTTAACAGATGAACCAAGAATTTATGGCTCCCTCACAGTATTGGCATCTAATGCTGCTGAGAACATCAAAAGCCTTTCAACATTGAGAATGCTTTGGTTAGATGATTGTAAGAAACTTGTGTCTTTGCCCATGCTTCCGCCATCTCTTGAGAAGTTGAGTGCTAGTAATTGCACTTCTCTAGACTCATACATGACTCAAAGGCTGGTGTTACAACACATGCTGCAAAGTCGCATACCCTACTTACGCAAACACTATCTAAGATGTTATGATGAAGAGTATTTACTTCCTGGAGAACATGTGAGTGATGAGTGTGGGTTTCACACCACGGGGAGTTCAATGACTATTCCTTGTCTTTGGAAAACTGAATTGTACGGTTTCATTTATTGCATCATTCTCTCTAAGGGATCACTCTTGCTCAGTGAAGTTTCGTGTTCTGTTTATCAAGATGGCATAAGGGTTGGCAGGTTCCAAAGATTGTTGGAATACGAAAGTTTGACTTCGAATCACGTGCTATATATGTATCATGACATCAATGAATTTGATACAATAACTGAAGTGCATGGTCATTTCTTCAGCAACATAACATTTATATTTGAAACTAGTGAAGCAAGCATACAAGAGTTTGGCATCTTTCCCATATATGGCTCAGAATCAGAGTTGAAACTGGTTGGTAGCAGAGAAGTTTTTGAGTCGAAATTCAGTACCCAAATCTTTAAATCTACAACATATTTAGATAAGTATGCTTAG 2940 0.3786 MVDQQIIGVVASVVSSKRYDVFLSFRGEDTRKKFTSHLYDALKQKEVETFIDYRLEKGEEISTTLTQVIEDSHISIVIFSENYASSKWCLGELSKIMECKKEKGQIVIPVFYDIDPSHVRKQTGSYEKFFVTHKGEPMCNKWKAALTEAANLAAYDSQTYRVESELIKDIVEDVLQKMAAIYPNCHKGLVGIEEKYEKIESLLKVGSNEVKILGIWGMGGIGKTSLARALYEKLSGEFEGHCFLENVREESDKHGEKALRNKLFSELLGNKNHCYDAGFSVTQFVLSRLGRKKVFVVLDDVATSEQLENLIEDFDFLGLGSRVIVTSRNKQIFSQVDKIYEVKELSFHHSLQLFSLTVFREKQPKHGYEEVSRRATFYCKGVPLALKVLGASLGSRSKAAWECELRKLQKFPNKKIHSVLKLSYDGLDHSQKDIFLDIACFFRGNQRDRVTNILEAFDFSAISGIEVLLDRALITISGANQLEMHDLIQEMGWEVVHQECIKDPGRRTRLWKHEEVHDVFKYNRGSEVTEGIILDLSKLIEDLYLSSDFLAKMSNVRFFKIHSWSKFNIFNVYLPNGLNTLSHKMRYLHWDGFCLESLPSNFCAEQLVELCMRCTKLKKLWDGVQNLVNLKTIDLWGSRDLIEIPDLSKAKKLENVSLCYCESLCQVQVHSKSLRVLNLYGCSSLRKFSVTSEELTRLSLAFTAICSIPSSIWHKRKLQALNLTGCCNLQELTDEPRIYGSLTVLASNAAENIKSLSTLRMLWLDDCKKLVSLPMLPPSLEKLSASNCTSLDSYMTQRLVLQHMLQSRIPYLRKHYLRCYDEEYLLPGEHVSDECGFHTTGSSMTIPCLWKTELYGFIYCIILSKGSLLLSEVSCSVYQDGIRVGRFQRLLEYESLTSNHVLYMYHDINEFDTITEVHGHFFSNITFIFETSEASIQEFGIFPIYGSESELKLVGSREVFESKFSTQIFKSTTYLDKYA* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0101 979 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 744 933 IPR044974 GO:0006952
Pvu6g0101 979 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 735 IPR044974 GO:0006952
Pvu6g0101 979 SMART till_3 18 152 IPR000157 GO:0007165
Pvu6g0101 979 Gene3D Ribonuclease Inhibitor 520 666 IPR032675 -
Pvu6g0101 979 SUPERFAMILY "Winged helix" DNA-binding domain 414 520 IPR036390 -
Pvu6g0101 979 Pfam TIR domain 19 191 IPR000157 GO:0007165
Pvu6g0101 979 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 735 - -
Pvu6g0101 979 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 744 933 - -
Pvu6g0101 979 Pfam Leucine Rich Repeat 606 625 IPR011713 -
Pvu6g0101 979 Pfam NB-ARC domain 196 424 IPR002182 GO:0043531
Pvu6g0101 979 Gene3D - 179 343 IPR027417 -
Pvu6g0101 979 Gene3D Ribonuclease Inhibitor 672 808 IPR032675 -
Pvu6g0101 979 SUPERFAMILY L domain-like 540 805 - -
Pvu6g0101 979 ProSiteProfiles TIR domain profile. 17 178 IPR000157 GO:0007165
Pvu6g0101 979 Gene3D - 15 178 IPR035897 -
Pvu6g0101 979 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 153 IPR035897 -
Pvu6g0101 979 Gene3D - 344 428 IPR042197 -
Pvu6g0101 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 438 IPR027417 -
Pvu6g0101 979 PRINTS Disease resistance protein signature 212 227 - -
Pvu6g0101 979 PRINTS Disease resistance protein signature 288 302 - -
Pvu6g0101 979 PRINTS Disease resistance protein signature 379 393 - -
Pvu6g0101 979 PRINTS Disease resistance protein signature 625 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0101 Pvu-Chr6 5017346 5021527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0101 15 737 WRKY Transcription Factor Family AT4G12020 31.378 2.75e-97 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0101 - - vun:114187776 1742.63