Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0097 ATGTCAAAAAAGTTGGATCGTGGAGGAGGAAGGGACCGGTTTAGGAGGGATTACCCTTCAAGATATGAAGATAACAAAGGGAATGGGGTTAGTGGACGTGACAACCGCAACGACAACCCTCCTTCCAGGCATCTCTGGGTTGGGAATCTATCCCACAGTATTGTAGAGGAAGAACTTGCTCGCCATTTCCTGCGGTTTGGACCACTGGAGAATGTTGCATTCCAGTCTGGCCGCAGCTATGCTTTTGTTAATTTTAGAAGGGATGAAGATGCTATTGATGCCATGAGAACACTACAAGGTTTTCCTCTTGCTGGCAACCCACTTAGAATCGAGTTTGCAAAGGCGGTCAGTGTTGCCCACCTTTTACTGCTAGTTACTTTTCCAGTTCATTATGTGAATCTACCACTG 408 0.4632 MSKKLDRGGGRDRFRRDYPSRYEDNKGNGVSGRDNRNDNPPSRHLWVGNLSHSIVEEELARHFLRFGPLENVAFQSGRSYAFVNFRRDEDAIDAMRTLQGFPLAGNPLRIEFAKAVSVAHLLLLVTFPVHYVNLPL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0097 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 108 IPR000504 GO:0003723
Pvu6g0097 136 MobiDBLite consensus disorder prediction 1 31 - -
Pvu6g0097 136 PANTHER RNA RECOGNITION MOTIF-CONTAINING 20 115 - -
Pvu6g0097 136 MobiDBLite consensus disorder prediction 1 43 - -
Pvu6g0097 136 Gene3D - 23 118 IPR012677 -
Pvu6g0097 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 115 IPR000504 GO:0003723
Pvu6g0097 136 SUPERFAMILY RNA-binding domain, RBD 19 115 IPR035979 GO:0003676
Pvu6g0097 136 SMART rrm1_1 44 111 IPR000504 GO:0003723
Pvu6g0097 136 CDD RRM3_Spen 45 114 - -
Pvu6g0097 136 PANTHER RNA-BINDING PROTEIN SPENITO 20 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0097 Pvu-Chr6 4948318 4950310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0097 44 127 Eukaryotic Initiation Factors Gene Family AT2G36660 31.461 1.24e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0097 - - pvu:PHAVU_006G009600g 266.929