Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0088 ATGGCCACTGCAAGGACTGTGAAGGACGTTTCTCCCCATGAGTTCGTCAAGGCTTACTCTTCTCACCTTAAGCGATCTGGCAAGATGGAGTTGCCTGAGTGGACTGATATTGTCAAAACAGCTAAATTTAAGGAGTTGGCTCCCTATGATCCTGACTGGTACTATGTTAGAGCTGCTTCCATGGCAAGAAAGATCTATTTGAGAGGAGGACTTGGTGTTGGTGCATTTCAAAGGATTTATGGAGGGAGCAAGAGGAATGGTAGCCGTCCTCCTCATTTCTGTAAGAGCAGTGGTTCCATTGCCCGTCACATTCTTCAGCAGTTGCAAACCATGAGCATAATTGAACTGGACACCAAGGGTGGCAGGAGAATCACGTCCAGTGGCCGGCGGGATCTTGATCAAGTTGCAGGACGCATTGTGGTTGCACCTTGA 432 0.4838 MATARTVKDVSPHEFVKAYSSHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGSIARHILQQLQTMSIIELDTKGGRRITSSGRRDLDQVAGRIVVAP* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0088 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Pvu6g0088 143 PANTHER 40S RIBOSOMAL PROTEIN S19 3 143 IPR001266 GO:0003735|GO:0005840|GO:0006412
Pvu6g0088 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Pvu6g0088 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Pvu6g0088 143 PANTHER RIBOSOMAL PROTEIN S19E, WINGED HELIX-TURN-HELIX DNA-BINDING DOMAIN PROTEIN-RELATED 3 143 - -
Pvu6g0088 143 Gene3D - 1 142 IPR036388 -
Pvu6g0088 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0088 Pvu-Chr6 4650594 4652295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0088 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 87.413 2.82e-95 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0088 K02966 - gmx:100305587 284.648