Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0084 ATGGATGTTCAAGTGATAAATGCGGAAGGAAGTGGTCATCAAACAAAGGCAGATAATGGGGATGCAGAGCCAAGTGACAGTGAAGTTAATAATGCTGAAAACTATGGAATTCATGTTGAGGATGGGATTTCTGAGCCATATATGGGTATGGAATTTGAGACTGTAGATGTTGCTAAGACATTTTATAATGAATATGCCAGACACATGGGTTTTAGCTCTAAAGTTGGCCCATATGGTCACACTAAAGTTGATGGTCACTCTAAAGTTGATGGTGAAAATTATAGGGAGTTCGTATGTGGGAGGGAAGGTTTAAAAAAAGGACTAAATGAAAGTTGCATGGCAATGATTAGGATCGAGCTAAAGGGTCAAAATAAATGGGTGGTAACAAAATTAGTGAACGAGCACAGTCATTCCCTGTTGAGTTCCAGTAAGGCATACAATAATCAGCCTAGTAAGCATTTTTCTAGTGTTGGAAGGACAATGCCTGAAACTTATCAAGGAGTGGGTCTTGTTCCTAGTGGTGTTATGTATGTATCTATGGATGGGAATCGTGTTTCGAATCAGAATACTCGTGGGATGAAGAACATTCATACCACTCCTGCTGAACGAAGTCACCCAGTTAAAAATTCCTCATTGTTGAATTATACTATTAGGCCTTCTTTGCAAAACCGGACATTGGGGAGGGATGCTCATAATCTGCTGGAGTACTTTAAGAAGATGCAGGCTGAGAATCCTGGTTTCTTCTATGCTATACAACTTGATGAAGACAATCGAATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCATACAGTTGTTACGGTGACACAGTTCATCTTGACACAACATACAAAGTAAATCAATATAGAGTGCCATTTGCTCCTTTTACTGGGGTAAATCATCATGGTCAAATGGTTTTGTTTGGTTGTGCGCTCCTTTTGGATGATTCTGAGGCATCTTTTTTATGGCTGTTGAAGACATTTCTGACGGCAATGAATGATTGTCAGCCTGTCTCTATAACTACTGATCAAGATAGAGCCTTGCAGACAGCAGTTTCTCAAGTTCTCCCACAAGCCCGCCACTGTATTAGCAAGTGGCATATCTTGAGAGAAGGCCAAGAAAGGTTGGCCCATGTATGTCTTGCGCATCCAAATTTTCAGGCTGAACTTTATAATTGTATTAACTTGACAGAAACCATTGACGAGTTTGAATCATTTTGGAATTGTATCCTCGATAAATATGAACTTAGAAGAAATGATTGGCTTCAGTCATTGTATAATGCTCGTGCTCAATGGGTTCCAGCATTCTTCCGTGATTCGTTTTTTGCAGCATTATCTCCTAATCAAGGATTTGATGATTCTTTTTTTGATGGTTATGTCAACCAACAGACGACATTATCGTTGTTCTTTAGGCAATACGAACGAGCTTTGGAGAGCTGGATTGAGAAGGAAATAGAAGCAGATTTTGAGACACTTTGCACAACACCAGTTTTAAAGACACCTTCACCAATGGAGAAACAGGTTGCTAATCTTTATACAAGAAAAATATTTTCAAAGTTTCAAGATGAGCTTGTTGAAACTTTTGTTTATACTGCAAATAGAATTGAAGGAGATGGACCAAATAGCACATTTAGAGTTGCAAAATTTGAGGATGACCAAAAGGCATACTCAGTCTCATTAAACCATTCTGAGTTGAAAGCTAATTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGACATATTTTAACAGTTTTCACTGTGACAAATGTACTTACATTACCACCCCATTACATCTTGAAACGTTGGACAAGAAATGCAAAAAACAGTTCCGGATTGGATGAACATACTGGTGAATCACATGCACAGGAGTCTTTGACAGCAAGATATAGCAATTTATGTAAGGAAGCCATCAGATACGCTGAGGAAGGGGCAGTAACTGTGGAAACATATAATGCTGCAATAAGTGGTATTAGAGAAGGTGGAAAGAAGGTCGCTAATGTGAAAAGAAGTGTTCCAAAAGTTTCTCCTAACAATCAGGCCAGTGGGACTGCATATGATGACAGGAAAACTTCCACTCCAACTTCAGATACCACTCCTCTTTTATGGCCACGACAAGATGAGATAATGAGGAGGTTTAATCTTAATGATGCTGGTGGTCCTGTTCAATCGGTTGCTGATCTAAACTTGCCACGGATGGCCCCAGTCTCTCTTTATCGTGATGATGGTCCATCTGAAAACATGGTAGTTCTTCCATGCCTGAAATCAATGACATGGGTAATGGAGAGCAAGAACTCAACTCCAGGGAATAAAGTAGCTGTTATCAATCTTAAGTTGCAAGATTATAGCAGGGTTCCTTCCACAGAATCTGAGGTTAAGTTTCATCTTTCTAGAGTTACTTTGGAACCAATGTTGAAGTCTATGGCTTACATCAGCGAACAGCTCTCAACACCAGCTAATAAGGTTGCAGTAATAAATCTCAAGCTTCAAGATACTGAGACAACCTCTGGTGAGTCAGAAGTAAAGTTTCAGGTGTCCCGGGATACATTGGGTGCTATGCTACGATCAATGGCCTATATCCGTGAGCAGCTTTCTCATGCTGACGATGCACAGTCAGAACCTCTATCTAAAAAGCATAAGAAGTAA 2658 0.3977 MDVQVINAEGSGHQTKADNGDAEPSDSEVNNAENYGIHVEDGISEPYMGMEFETVDVAKTFYNEYARHMGFSSKVGPYGHTKVDGHSKVDGENYREFVCGREGLKKGLNESCMAMIRIELKGQNKWVVTKLVNEHSHSLLSSSKAYNNQPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNTRGMKNIHTTPAERSHPVKNSSLLNYTIRPSLQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSCYGDTVHLDTTYKVNQYRVPFAPFTGVNHHGQMVLFGCALLLDDSEASFLWLLKTFLTAMNDCQPVSITTDQDRALQTAVSQVLPQARHCISKWHILREGQERLAHVCLAHPNFQAELYNCINLTETIDEFESFWNCILDKYELRRNDWLQSLYNARAQWVPAFFRDSFFAALSPNQGFDDSFFDGYVNQQTTLSLFFRQYERALESWIEKEIEADFETLCTTPVLKTPSPMEKQVANLYTRKIFSKFQDELVETFVYTANRIEGDGPNSTFRVAKFEDDQKAYSVSLNHSELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPPHYILKRWTRNAKNSSGLDEHTGESHAQESLTARYSNLCKEAIRYAEEGAVTVETYNAAISGIREGGKKVANVKRSVPKVSPNNQASGTAYDDRKTSTPTSDTTPLLWPRQDEIMRRFNLNDAGGPVQSVADLNLPRMAPVSLYRDDGPSENMVVLPCLKSMTWVMESKNSTPGNKVAVINLKLQDYSRVPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHADDAQSEPLSKKHKK* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0084 885 Pfam MULE transposase domain 280 372 IPR018289 -
Pvu6g0084 885 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 33 813 - -
Pvu6g0084 885 Pfam SWIM zinc finger 564 592 IPR007527 GO:0008270
Pvu6g0084 885 Pfam FAR1 DNA-binding domain 60 140 IPR004330 -
Pvu6g0084 885 MobiDBLite consensus disorder prediction 673 705 - -
Pvu6g0084 885 MobiDBLite consensus disorder prediction 676 705 - -
Pvu6g0084 885 ProSiteProfiles Zinc finger SWIM-type profile. 558 594 IPR007527 GO:0008270
Pvu6g0084 885 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 33 813 IPR031052 GO:0006355
Pvu6g0084 885 SMART 26again6 569 596 IPR006564 GO:0008270
Pvu6g0084 885 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0084 Pvu-Chr6 4534201 4545268 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu6g0084 MULE 7.4e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0084 - - gmx:100786516 1587.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0084 6 4534201 4545268 Pvu8g2156 8 51952375 51957937 PCT