Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0079 ATGAAGAACCTTTCTCTTTATGCTTGTTTACTCACTTTGAGTTTCTTGGTTCTTCTTCCTTGTAGCAAAGCCAGTCAGGCTGATAAACTTGATGAGTTGATTCTGTCTAGAAGCTCACAGAAGGCTCCTATGACCCTTTCTTGGGCAGAGGAAGATGCATTGAAAACTCATTCTTCTGCTTATGTTGCACCCCAAGAGGGGCTACAGCAAGCTGACAAGATTGTTGCATTGCCTGGCCAGTCCTATGGGGTGAATTTTGACCAATATTCAGGATATGTCACCGTTGATCCAGAGGCTGGAAGAGCACTTTTCTATTATTTTGTGGAGTCTCCATATAACCCTTCCACCAAACCTTTAGTATTGTGGTTAAATGGAGGACCCGGTTGTTCCTCATTGGGATATGGCGCCTTTGAGGAATTGGGACCTTTCAGAATAAACTCTGATGGAAAAACACTGTATCGTAACAAATATGCTTGGAATGAAGTGGCAAATGTGCTGTTCCTGGAATCCCCTGCTGGAGTAGGCTTTTCCTACTCAAACACTAGTTCAGACTATGATCATGCAGGAGATAAATCTACTGCTAAAGATGCCTATGTTTTCCTTATCAATTGGCTAGAAAGGTTTCCACAGTACAAAACTCGTGATTTCTACATAACTGGGGAAAGCTATGCTGGTCACTATGTTCCTCAGCTTGCATACACTATTTTGCTGAACAATAAATACAGTCACCAAAATATTAACATCAAAAGCATTGCTATAGGGAATGCTTGGATTGACGATGTTACCGGTTCAAAGGGAATAGTTGATTACTTATGGAGTCATGCTTTGAACTCAGATCAAACACATGAGTTGATTCAGAAGTACTGCGATTTCAGTGCTGAAAATGTCTCAGAAATATGTGCCAATGCAACAAGAACGGCCCTCATTGAGAAAGGAAACATAGACTTCTATAACATCTATGCTCCACTGTGTCTTGACTCTTCTCTCAAAAATGGATCAACTGGTTCTGTATCTGATTTTGACCCGTGTTCTGATTATTACGGGGAAGCCTACCTAAATAGGCCAGAGGTCCAACTAGCTCTTCATGCAAAACCCACAAACTGGACCCTCTGCAGTGATCAATTAAGCTGGAACGACAGCCCAACTACCATCCTGCCAGTCATCAAGTATCTCATCGATAGTGGTATTGGATTGTGGATATACAGTGGTGATACTGATGCAAGGGTGCCAGTCACATCTTCCAGATATTCAATCAACAGCCTCAAGCTACCTATCCAGGTTCCTTGGCGTCCATGGTATTCTGAAAAAGAGGTTGGAGGGTATGTGGTGAAATACAAAGGAGTTACATTTGTTACAGTTAGAGGAGCAGGGCATTTGGTTCCGAGCTGGCAACCAAAACGGGCTCTGACCTTCGTCTCTTCGTTCCTCTATGGAATCCTGCCTCCTGCTTCACCATGGAAGGCTTTCTAA 1470 0.4286 MKNLSLYACLLTLSFLVLLPCSKASQADKLDELILSRSSQKAPMTLSWAEEDALKTHSSAYVAPQEGLQQADKIVALPGQSYGVNFDQYSGYVTVDPEAGRALFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNKYAWNEVANVLFLESPAGVGFSYSNTSSDYDHAGDKSTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLAYTILLNNKYSHQNINIKSIAIGNAWIDDVTGSKGIVDYLWSHALNSDQTHELIQKYCDFSAENVSEICANATRTALIEKGNIDFYNIYAPLCLDSSLKNGSTGSVSDFDPCSDYYGEAYLNRPEVQLALHAKPTNWTLCSDQLSWNDSPTTILPVIKYLIDSGIGLWIYSGDTDARVPVTSSRYSINSLKLPIQVPWRPWYSEKEVGGYVVKYKGVTFVTVRGAGHLVPSWQPKRALTFVSSFLYGILPPASPWKAF* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0079 489 Gene3D - 343 376 - -
Pvu6g0079 489 SUPERFAMILY alpha/beta-Hydrolases 75 479 IPR029058 -
Pvu6g0079 489 Pfam Serine carboxypeptidase 78 476 IPR001563 GO:0004185|GO:0006508
Pvu6g0079 489 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Pvu6g0079 489 ProSitePatterns Serine carboxypeptidases, histidine active site. 448 465 IPR033124 GO:0004185
Pvu6g0079 489 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 18 483 IPR001563 GO:0004185|GO:0006508
Pvu6g0079 489 PANTHER CARBOXYPEPTIDASE 18 483 - -
Pvu6g0079 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Pvu6g0079 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Pvu6g0079 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Pvu6g0079 489 PRINTS Carboxypeptidase C serine protease (S10) family signature 448 461 IPR001563 GO:0004185|GO:0006508
Pvu6g0079 489 Gene3D alpha/beta hydrolase 69 325 IPR029058 -
Pvu6g0079 489 Gene3D - 384 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0079 Pvu-Chr6 4252089 4256742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0079 340 478 Calmodulin-binding Proteins AT2G22960 28.378 2.07e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0079 K16297 - gmx:100779407 887.486