Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu6g0074 | GACTTCCCTCCTCAGAACTTTCTCTCTGCTAACTCAGATTCTGAATCCTTTAGGGAGCATCAGATTGGATCATCCTCCCATATACCACCACCACCACCACCCACCACAAGGCTTGTCATTATCAAGGTGGCTTCAGGATGTGACATCATTGAGTCCATTTTTGACGTTGCTCGGAGAAACCAAACTAGCCTTGCCATCCAAAGTGTCTTTGGTACCATTGCCTCTGTGACCCTCCGTAACATCGCTAATGTTGTCCCTGCTATCGTGGCCTACGGGCCATTCAACATACTTTCTCTTACTGGTTGCTACTTTTATGACAACCAATATACCCTTTTTCCCGAAGCCACCCCTCCACCTTCCTTTTTCTTTGGGATTCACTTCTCTACCTCTCATGGTCGTGTCTTTTGTGGTAATGTTGGTGGTCGAGTCATCGCATATAAGGAAGTCATCTTGACCATTTTCACCTTCAAGAACCCTAGAATTCTTAAATATGTTCCTGAAGGCGAAGAAAGCGATGACGAGGATGATGATGAAAATTACAATGAAAATTGTAGTGAGGATCCTATTAATTTTAATAATAACGGAGATGACTTGACAACTTTCAACTATAGTAATTGA | 618 | 0.4288 | DFPPQNFLSANSDSESFREHQIGSSSHIPPPPPPTTRLVIIKVASGCDIIESIFDVARRNQTSLAIQSVFGTIASVTLRNIANVVPAIVAYGPFNILSLTGCYFYDNQYTLFPEATPPPSFFFGIHFSTSHGRVFCGNVGGRVIAYKEVILTIFTFKNPRILKYVPEGEESDDEDDDENYNENCSEDPINFNNNGDDLTTFNYSN* | 206 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu6g0074 | 205 | ProSiteProfiles | PPC domain profile profile. | 32 | 183 | IPR005175 | - | |
| Pvu6g0074 | 205 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 36 | 180 | - | - | |
| Pvu6g0074 | 205 | CDD | DUF296 | 37 | 154 | IPR005175 | - | |
| Pvu6g0074 | 205 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 38 | 157 | IPR005175 | - | |
| Pvu6g0074 | 205 | MobiDBLite | consensus disorder prediction | 168 | 183 | - | - | |
| Pvu6g0074 | 205 | MobiDBLite | consensus disorder prediction | 167 | 195 | - | - | |
| Pvu6g0074 | 205 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 36 | 161 | - | - | |
| Pvu6g0074 | 205 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 36 | 180 | IPR014476 | GO:0003680 | |
| Pvu6g0074 | 205 | Gene3D | - | 36 | 170 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu6g0074 | Pvu-Chr6 | 3851096 | 3851713 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu6g0074 | 40 | 183 | AT-hook Motif Nuclear Localized (AHL) Family | AT5G49700 | 27.397 | 1.48e-11 | 60.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu6g0074 | - | - | pvu:PHAVU_006G007300g | 389.808 |