Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0058 ATGGCCGAAGCTTCAACAGTCACCTTCTTCTCCACTCTCCTTCCCTCTTTCCGCCCCCACGCCCATGTGTCTCACCGTCCCCTGACCCTCCCACGGAAGCTCCAGGTTCGCTGCTCGGTGTCCGCCGGTGCGACTCCCCAGAACGCAGTGGCTTGGGGATGCGAGATTGAGTCGCTGGAGAGTGCGTCGGCGCTCCAGAGGTGGCTGTCGAAGTCGGGGCTTCCGCCTCAGAAGATGGGGATAGATAGGGTGGAGGTGGGAGAGAGAGGACTTGTGGCTTTGAAGAGCATAAGGAAAGGGGAGAAGCTGCTCTTTGTGCCTCCCTCTCTTGTCATCACTCCCAATTCAGAGTGGAGTCACCCTGAAACTGGTGAAGTATTGAAAAGAAATTCAGTGCCAGATTGGCCTTTGCTTGCAACTTACCTCATAAGTGAAGCTAGCCTCATGGAATCTTCAAGATGGAGCAATTATATATCAGCCTTACCTCGTCAACCTTACTCGCTTCTTTACTGGTCCCAAGCAGAACTAGATCTCTACTTGGAAGCTTCGCAGATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTATTCCCTGAGGAGGTGTTCAACATTGAGTCCTTCAAATGGTCATTTGGTATTCTTTTCTCCCGCTTGGTTCGGTTACCCTCAATGGATGGACAGGTTGCCTTGGTTCCTTGGGCTGATATGCTAAATCATAGTTGTGAGGTGGAGACATTTTTGGACTATGACAAGCAATCAAAGGGAATTGTCTTTACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCGTATGGAAAAAAATCAAATGGGGAGCTTTTGCTATCTTACGGATTTGTTCCCAAGGAAGGTGGCAATCCCAGTGATTCTGTTGAGTTGTCACTGTCACTGAAGAAATCCGATGCATCCTACAAGGAGAAGTTAGTACTGTTGAAGAAATACGGATTATCAGCATCTCAGTGTTTTCCTATACAGATTACTGGTTGGCCATTGGAACTATTGGCTTATGCTTATTTAGCTGTCAGTCCTTCAAGCATGAGAGAAAATTTTGAAGAGATGGCTGCTGCAGCATCAAATAATACCACCTCCAAGAAGGATTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGACAGCTGCGAGGCAAGCATATCAAAATACAACAAGTTCTTGCAGGCAAGTGGATCACTGGATTTGGATGTGACTTCTCCTAAACAACTCAACAGAAGGCTCTTTCTGAAACAGCTAGCTGTGGATTTGTCTAATAGCGAGCGAAGGATTTTATTTCGGGCTCAATACATACTGAGAAGAAAACTGAGAGACATGAGGGCTGGTGAATTAAGAGCCCTAACAATATTCAACGGTTTCCGGAAATTTTTCCAATGA 1479 0.4571 MAEASTVTFFSTLLPSFRPHAHVSHRPLTLPRKLQVRCSVSAGATPQNAVAWGCEIESLESASALQRWLSKSGLPPQKMGIDRVEVGERGLVALKSIRKGEKLLFVPPSLVITPNSEWSHPETGEVLKRNSVPDWPLLATYLISEASLMESSRWSNYISALPRQPYSLLYWSQAELDLYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPEEVFNIESFKWSFGILFSRLVRLPSMDGQVALVPWADMLNHSCEVETFLDYDKQSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGGNPSDSVELSLSLKKSDASYKEKLVLLKKYGLSASQCFPIQITGWPLELLAYAYLAVSPSSMRENFEEMAAAASNNTTSKKDLRYPEIEEQALQFILDSCEASISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLSNSERRILFRAQYILRRKLRDMRAGELRALTIFNGFRKFFQ* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0058 492 ProSiteProfiles SET domain profile. 77 293 IPR001214 GO:0005515
Pvu6g0058 492 SMART set_7 77 299 IPR001214 GO:0005515
Pvu6g0058 492 Pfam SET domain 89 293 IPR001214 GO:0005515
Pvu6g0058 492 Pfam Rubisco LSMT substrate-binding 326 459 IPR015353 -
Pvu6g0058 492 SUPERFAMILY SET domain 61 310 IPR046341 -
Pvu6g0058 492 Gene3D - 312 477 IPR036464 -
Pvu6g0058 492 PANTHER - 46 287 - -
Pvu6g0058 492 PIRSF RMT_SET 1 489 IPR011192 GO:0009507|GO:0030785
Pvu6g0058 492 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 46 287 - -
Pvu6g0058 492 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 323 488 IPR036464 -
Pvu6g0058 492 CDD SET_RBCMT 71 307 IPR044431 GO:0016279|GO:0018022
Pvu6g0058 492 Gene3D set domain protein methyltransferase, domain 1 30 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0058 Pvu-Chr6 1960713 1967063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0058 64 262 NAC Transcription Factor Family AT3G56570 22.549 1.91e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu6g0058 SET 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0058 - - gmx:100803319 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0058 6 1960713 1967063 Pvu6g0058 6 1960713 1967063 ECH