Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0054 ATGGCTTCTAGAAAATCCGACAACCCTCACTCCGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGACACCACCCTAGAGACGTTTGTAAAGTACTTCGAGAAGTACGGCGAGATAACGGACTCCGTTATCATGAAAGACCGTCAAACGGGTCGACCCAGGGGCTTCGGGTTCATCACCTACGCGGATCCCTCCGTCGTTGATCAAGTCATTCAGGACAACCACATCATCAACGGCAAGCAGGTCGAGATCAAGAGGACAATTCCCAAGGGTTCGTCGCAGGCTAATGACTTCAAAACCAAGAAGATCTTCGTCGGCGGTATTCCAACATCAGTATCCGAAGATGAGTTCAAGAACTTCTTCTCCAACTATGGGAAGGTGGTAGAGCATGAGATTATACGGGACCACACTACAAAGCGATCAAGGGGGTTTGGCTTTATAGTTTTTGATAGTGAAAAGGTTGTGGATAATATTTTGGAAGATGGGAGCATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTGCTCCGTTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGATTCAGTGGATTTGGTGATTCTTATGGAAGTTTTGGCGGTAGCGGGTATGGTCCTGGTTCTTATAGGTCACTTGGTGGAGGGTTTGCGGGTAGGCTTGGCGATTATGGTGGGTATGGGGCTGGAGATGACTTTGGTGGTAGTTTTGGGGGTTATGGTGGCAGTGGTGCTGGTGGCTATGCTGGCTTTCGAGGAGAATCATCGTTTGGCTACTCTAGTCGCTACGGATCATACATGGGTGGTCTTGGTGCTGGTTATGGCAGCAGTGGGTTAGGTGTGTATGGACGAGGTGCTGGGGGCTATGGGAGCTATGGTGGTCCGGGCACTGGTGGGGGTTATGAATCAGGCCCAGGTGCTGGTTATGGTGGAGCTGGAGGTGGAGTGTATCCCAGTAGGGGAAGCTATGGTGGCAGTAGTCGTTACCATCCTTACACAAGATAG 1062 0.5028 MASRKSDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDQVIQDNHIINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDEFKNFFSNYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILEDGSMIDMAGTQVEIKKAEPKKSSNPASLAPFASDSRARSYNDGFSGFGDSYGSFGGSGYGPGSYRSLGGGFAGRLGDYGGYGAGDDFGGSFGGYGGSGAGGYAGFRGESSFGYSSRYGSYMGGLGAGYGSSGLGVYGRGAGGYGSYGGPGTGGGYESGPGAGYGGAGGGVYPSRGSYGGSSRYHPYTR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0054 353 SMART rrm1_1 19 90 IPR000504 GO:0003723
Pvu6g0054 353 SMART rrm1_1 107 180 IPR000504 GO:0003723
Pvu6g0054 353 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
Pvu6g0054 353 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Pvu6g0054 353 Gene3D - 18 98 IPR012677 -
Pvu6g0054 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Pvu6g0054 353 PANTHER OS08G0320100 PROTEIN 1 353 - -
Pvu6g0054 353 Gene3D - 99 193 IPR012677 -
Pvu6g0054 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Pvu6g0054 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 87 IPR000504 GO:0003723
Pvu6g0054 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 353 - -
Pvu6g0054 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0054 Pvu-Chr6 1829219 1832391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0054 4 193 Eukaryotic Initiation Factors Gene Family AT1G71770 26.190 1.56e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0054 K12741 - gmx:100801373 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0054 6 1829219 1832391 Pvu6g0054 6 1829219 1832391 ECH
Pvu6g0054 6 1829219 1832391 Pvu8g2955 8 59128684 59133628 PCT