Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0053 ATGGCCCCACTTGCATTATATTTTTTTCCTCTTTGGTTTGCACTTTTTATCACCTTTGCTTATGTCACATTACCTACACACTCTCTCTCTCTCTCTCTCTCACACACACACACACCATTTGCATTATTCTTCTTTTCTTTTCATATCTCATCTACATTTATCCATCTTCTATCTTCCTATTCCTTTCTATCTCCACTTCTCAACACACCACACCACACCAGTCTTGCCAGAGCAGAAGCCAGAAGAGAGGAGAGAGAAACACACACAAAAAGTAAGAGAGAGAAAGGCCCTTTTGTTCTCTTCAAAAAGTTCAGCAGCTTCTACTTCCAGGACTCTTTCTTTGCTTTTAAGTTTTGCATACAAATAATTTTTTTTTTCTTTTTTTCTGAAAAAGCCACACCCTTTTGCTTACTGATCTTGTTCTCTTTGTCTTCCTTGCCGTCAGCTTCCGCATCTTCAGACAGGGAGAACTTCTGTTTTTTCAGAGTATATCTTGGTCTGTCAAGACTGTTACTAGGTGGAGATTCCTTGATTTATTCCAAGGGGCAAGAGAAAAAAAGTGTAAAGATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGATGCTGCCTACTTATGTTTGTCTTGTGATCGGAATGTTCATTCGGCTAATGCCCTTTCCAGGCGTCATTCACGCACCCTTTTGTGTGAGAGATGCAATTCACAACCTGCCTTTGTGAGGTGTGTTGAAGAGAAAATTTCACTGTGTCAGAATTGTGATTGGTTGGGTCATGGAGTCTCTACATCTTCAACACATAAGAGACAAGCAATCAGTTGCTACTCTGGTTGCCCTTCAGCGGCGGAACTGTCTTCAATATGGTCCTTTGTGCTGGATATCCCTTCCATTAGAGAGTCTACATGTGAGCAAGAACTAGGCTTAATGAGTATTAATGAGAACAACAAGAGTGTTGGAGTTCTACCTGAAAATGGGAATGTGTCTGGTTCAGATCAAGTTACTGATCTACCTTCTTTGGACAAGTCTTTGGTTGGTACATCTTCAGTACCCGAGTCAAGCTCCAAACCTCCAGCTGGACCTGCCAATGAATGTCTGCCAAAGTTGTACTGTCCTGCTGCAAAATGCCCTGCATTATGTGAAGATGATAATCTATATGATGATTTTGACATGGATGAAATGGATCTAAATCTTGAGAACTATGAAGAACTTTTTGGTGTGGCCCTCAGTCATTCCGAAGAGCTATTTGAAAATGGTGGATTTAATAGTTTGTTTGGGACAAAAGACATGTCTGCAGGAGATTCCAGTTGTCAGGATGCCATTGCTGCCGAGGGGTCATCGGTTGGACTGGTCAATGCTACACAACCGGCTTGCAGCAACGCAGCATCTGCAGATTCCATTTTGAGTACTAAAACCGAACCGGTTCTTTGTTTGACGGGGAGGCAAGCTCAATCAAACCTTTCTTTTTCTGGCATTACCGGAGAGAGTAGTGCTGCAGACTATCAAGACTGTGGGGCTTCTTCCATGCTTCTCAGGGGAGAACCTCCTTGGTTTGCTCCTTGTCCTGAGAATTCCTTGCAATCTGCCAACCGCAGCAATGCTGTCTTGCGCTACAAGGAAAAGAAGAAGGCACGAAAGTTCGAAAAACAAGTGCGGTATGCCTCTCGCAAGGCAAGGGCCGATGTCAGAAGGCGGGTGAAGGGCCGGTTTGTGAAAGCCGGTGACGTCTACGATTATGACCCTTTGAGCACAACCAGAAGCTACTGA 1782 0.436 MAPLALYFFPLWFALFITFAYVTLPTHSLSLSLSHTHTPFALFFFSFHISSTFIHLLSSYSFLSPLLNTPHHTSLARAEARREERETHTKSKREKGPFVLFKKFSSFYFQDSFFAFKFCIQIIFFFFFSEKATPFCLLILFSLSSLPSASASSDRENFCFFRVYLGLSRLLLGGDSLIYSKGQEKKSVKMGYICDFCGDQRSMVYCRSDAAYLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGVSTSSTHKRQAISCYSGCPSAAELSSIWSFVLDIPSIRESTCEQELGLMSINENNKSVGVLPENGNVSGSDQVTDLPSLDKSLVGTSSVPESSSKPPAGPANECLPKLYCPAAKCPALCEDDNLYDDFDMDEMDLNLENYEELFGVALSHSEELFENGGFNSLFGTKDMSAGDSSCQDAIAAEGSSVGLVNATQPACSNAASADSILSTKTEPVLCLTGRQAQSNLSFSGITGESSAADYQDCGASSMLLRGEPPWFAPCPENSLQSANRSNAVLRYKEKKKARKFEKQVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSTTRSY* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0053 593 CDD Bbox1_BBX-like 193 236 - -
Pvu6g0053 593 Pfam CCT motif 536 578 IPR010402 GO:0005515
Pvu6g0053 593 MobiDBLite consensus disorder prediction 326 361 - -
Pvu6g0053 593 CDD Bbox1_BBX-like 236 278 - -
Pvu6g0053 593 MobiDBLite consensus disorder prediction 326 365 - -
Pvu6g0053 593 ProSiteProfiles Zinc finger B-box type profile. 189 236 IPR000315 GO:0008270
Pvu6g0053 593 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 190 593 - -
Pvu6g0053 593 ProSiteProfiles Zinc finger B-box type profile. 232 278 IPR000315 GO:0008270
Pvu6g0053 593 SMART bboxneu5 189 236 IPR000315 GO:0008270
Pvu6g0053 593 SMART bboxneu5 237 278 IPR000315 GO:0008270
Pvu6g0053 593 ProSiteProfiles CCT domain profile. 536 578 IPR010402 GO:0005515
Pvu6g0053 593 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 190 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0053 Pvu-Chr6 1814435 1819935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0053 190 593 C2C2-CO-like Transcription Factor Family AT3G07650 56.220 3.16e-152 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu6g0053 CCT 3.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0053 - - pvu:PHAVU_006G005200g 1112.83