Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0052 ATGGGGCTGTCAAGTCTCCCAGAACCATCTGAAGGAATGCTATGTGTGCTTCTTGTAAACACTTCCTTGTCCATATCCCTATTCAAGGGCATTGTTAGGACAATTCTTCACATTGTTGGTATCCGTGTTGCATCATCATCTCCTTCACAAGACATCTCCCAAAGCCTTTCTGAGCAATCAGAGGGTCTCATTGAAGAGTTCAGAAGCAGGATACCAAGCCTGAGGTTTGGCACCATGTGTGGCGGCAAACAACCTCAAGATGAATGTTGTGTGTGTCTCACAAGGTTTAAGCCAGAATCTGAGATAAACCGTTTACCCTGTGGCCATCTTTTCCATAAGGTGTGCTTGGAGAAGTGGTTGGACTATTGGAACACTACATGCCCACTTTGCAGGACTCCCTTGATGCCTGAAGATGACACATCTTGGTTTTAG 432 0.456 MGLSSLPEPSEGMLCVLLVNTSLSISLFKGIVRTILHIVGIRVASSSPSQDISQSLSEQSEGLIEEFRSRIPSLRFGTMCGGKQPQDECCVCLTRFKPESEINRLPCGHLFHKVCLEKWLDYWNTTCPLCRTPLMPEDDTSWF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0052 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 136 IPR013083 -
Pvu6g0052 143 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Pvu6g0052 143 Pfam Ring finger domain 87 131 IPR001841 -
Pvu6g0052 143 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 139 - -
Pvu6g0052 143 SUPERFAMILY RING/U-box 82 137 - -
Pvu6g0052 143 PANTHER - 1 139 IPR044249 -
Pvu6g0052 143 SMART ring_2 89 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0052 Pvu-Chr6 1755581 1757159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0052 1 138 C3H Transcription Factor Family AT2G04240 59.091 1.06e-52 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0052 K16285 - gmx:100306440 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0052 6 1755581 1757159 Pvu6g0052 6 1755581 1757159 ECH