Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0040 ATGGGTCGCTGCCGTGCGGCGTCGGCGTCGGGCCCCGCCGACGATGACCCCAACCTCAGATTAAAGAGAAAAAAGGCTGCTCTGAGCACCGAAAATTCAGAAACTTTACCTACAGGCCAAGGAATAGCTAATAGCAAGGTATCTCTTTATCACTGTAATTATTGCAACAAAGATATTTCGGGGAGGATTCGCATCAAGTGTGCTGTGTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCCCACAAATGCAATCATCCGTATCGGATTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATGTTACTTTTAGAGGCCATTGAGATGTATGGATTCGGGAATGGGAATGAAGTTGCAGAATATGTTGGAACAAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCACCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAGAGACGAACTCTTTGCCATGGTTAAGGTACATGAAGCCAAAAAAGGTTTGTTTCTCAAGAACTAA 579 0.4266 MGRCRAASASGPADDDPNLRLKRKKAALSTENSETLPTGQGIANSKVSLYHCNYCNKDISGRIRIKCAVCQDFDLCIECFSVGAEVTPHKCNHPYRIMDNLSFPLICPDWNADEEMLLLEAIEMYGFGNGNEVAEYVGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMGKSRDELFAMVKVHEAKKGLFLKN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0040 192 SMART sant 106 155 IPR001005 -
Pvu6g0040 192 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 13 188 IPR034318 GO:0003713|GO:0006357|GO:0035065
Pvu6g0040 192 MobiDBLite consensus disorder prediction 1 20 - -
Pvu6g0040 192 Pfam Zinc finger, ZZ type 50 88 IPR000433 GO:0008270
Pvu6g0040 192 SUPERFAMILY Homeodomain-like 102 156 IPR009057 -
Pvu6g0040 192 CDD ZZ_ADA2 50 98 IPR041983 -
Pvu6g0040 192 SMART zz_5 46 91 IPR000433 GO:0008270
Pvu6g0040 192 ProSiteProfiles SANT domain profile. 105 157 IPR017884 -
Pvu6g0040 192 Gene3D - 104 155 - -
Pvu6g0040 192 CDD SANT 110 150 IPR001005 -
Pvu6g0040 192 SUPERFAMILY RING/U-box 50 113 - -
Pvu6g0040 192 Pfam Myb-like DNA-binding domain 109 150 IPR001005 -
Pvu6g0040 192 Gene3D - 43 98 IPR043145 -
Pvu6g0040 192 ProSiteProfiles Zinc finger ZZ-type profile. 47 103 IPR000433 GO:0008270
Pvu6g0040 192 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 188 - -
Pvu6g0040 192 ProSitePatterns Zinc finger ZZ-type signature. 52 79 IPR000433 GO:0008270
Pvu6g0040 192 ProSiteProfiles Myb-like domain profile. 110 153 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0040 Pvu-Chr6 1454577 1457697 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0040 1 180 EF-hand Containing Proteins AT3G07740 57.672 7.18e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu6g0040 Myb_DNA-binding 2.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0040 K11314 - pvu:PHAVU_006G004000g 402.905