Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0025 ATGGACAAGGCAGCTGCTGAACTTCAACGTGAGGCAGCAGATCCTGCTATTCTTCTTCACCGCCATCAGTGTTCTGCTGGAAATGGGATAGGTGACAGTACCTCCTTGATTCCAGAATCCAGAAGACCACACCTCTCCTCTCTGCAAATACCAGCAAGGTCAGTGGAAAATGCATTATCCTCTTTCACAAAGACAGATGGTCCTACATTGATATCAAGTCCAGGTTCCGGTAGAGGACTTCCCCCAAGGCCAAATTCAGCCAGAGTCAAGTCCACTATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAAGGCTAAGAATGGTTCACAAGATAGTGAAAGGACAGTTCTTATTGTTCCTGATAACTTACCATCAGATTGTCCTGTGGATAAGCCTTCAACTTCTAAGCCTTCAACCTCTAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTTTGTTCTCTTCATCAACCAAAGCCACACATTCATTGCCTGTTACTCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCTAGGGTGTGATTCTGATTCAAGTAAAATGGAAGTAAATCAGCACATTACTCGATCGGTTTCGGTTCCTGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTAATTTCAGCAAGATCACTTCTAACAACTGGTGAAGGCATCTCAACTCAGAATGCTTCCGGATCTGAGATTGTTGTTGAAGATACTTCTGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGCTTGGTGGAGCTTGCGGAAGGAGGTAATACTCTGAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAGGAAGTCCTTAACCTCCCCGTAACACTCTTGAAAATTTCTAATCCTCAAACTGTTATTCCGCAGCCATTACCAGCACCACAGCAAAGAGAAGTAACTTCTTACAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAGCTACTGGTTTCAGATTTGGGAACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTAGGACTCCTTTCATCTATGATTGCTTCAACCATGGTGAGCGGGAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACCATACTTAATGTTAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTCTGGTAACGGAATATGTCAGATGGAGAATGAGAAGACTGATTCAATCTTCTACGACACAACAACTGCGTCGTGATCATGCACACCAGCAGCAAGAACATCAAAGACTGCATACTCAACTGCAAAGGCCGCAGCAAGAGCAGCACCTATGA 1506 0.4303 MDKAAAELQREAADPAILLHRHQCSAGNGIGDSTSLIPESRRPHLSSLQIPARSVENALSSFTKTDGPTLISSPGSGRGLPPRPNSARVKSTMKSLLSERSFKAKNGSQDSERTVLIVPDNLPSDCPVDKPSTSKPSTSKPSTSRSLSLNKILFSSSTKATHSLPVTPTANSGAEIVQGRHLGCDSDSSKMEVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTGEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISNPQTVIPQPLPAPQQREVTSYRIWQDLSVLILVSMLAYFCFLEELLVSDLGTHALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQLRRDHAHQQQEHQRLHTQLQRPQQEQHL* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0025 501 PANTHER OS02G0165000 PROTEIN 23 485 - -
Pvu6g0025 501 CDD RING_CH-C4HC3_MARCH 262 310 - -
Pvu6g0025 501 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Pvu6g0025 501 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Pvu6g0025 501 MobiDBLite consensus disorder prediction 28 42 - -
Pvu6g0025 501 MobiDBLite consensus disorder prediction 62 146 - -
Pvu6g0025 501 MobiDBLite consensus disorder prediction 127 146 - -
Pvu6g0025 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 317 IPR013083 -
Pvu6g0025 501 SMART ringv_2 261 310 IPR011016 GO:0008270
Pvu6g0025 501 MobiDBLite consensus disorder prediction 88 115 - -
Pvu6g0025 501 PANTHER OS02G0165000 PROTEIN 23 485 - -
Pvu6g0025 501 SUPERFAMILY RING/U-box 258 313 - -
Pvu6g0025 501 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0025 Pvu-Chr6 656749 664103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0025 256 316 C3H Transcription Factor Family AT2G37950 46.774 6.76e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0025 - - pvu:PHAVU_006G002500g 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0025 6 656749 664103 Pvu8g2999 8 59364989 59370251 PCT