Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0013 ATGGATTCCAGTGCCAGACAAAGCTTGAAGCGCAAGTTAGCGGAAGAGGTGAAGGATTCTCTCTGCAAGCGAGTTCCCCCAACTTTCACTTCCATTATTCTTAAGACTCTCTTTCTCCTCAACTCTTTCGATCACGTTCTTCTCAACAAACTCATCACCATTCTTGTCAAACTCTGCAAAACAACGAAGCATGAAATCCATGACGATTTTATTGATATTTTGGTGAATAACGGTGCTGTCCAGGCTCTGGTGAGGATACTTCACCTACCGGAAAAGGTTGTGGAAGATTACAGTGACAGACTTATCCAGGCTCGTCTCCTCCAACTGAAAAAAGGGTGCGCGTTCATCCTTGGAACTCTTGCCAAAAAGTCGGTTTATCAGCAACTTATCATAGATGCTGGAGCCTTCTTGTATCTTCTGCGCTTGTTAAAGAGCCACAAGACGATTCCCAAATCTCCATCAGTTCCTGGTTTTCTGAGGAGAGTGGTTGATGCAATATCCAAGCTTGCTTACAAAAATAACAAAGTTAAAATGCTTATAAGAAAGGAAGATGGCATCGCTCCTCTGATTGAATTGCTCGAATTCAAGGTGAAAAAGGTGCAGGTCGCGGTTACAAATGCCTTAGGAACATTGGCATTTGATAATGCTCACACTGTAACTAAGATGGTTGAATGCAACGCATTACCCAGTCTTGTACTAATGCTTCAATCAGAGGATTCTGTAACACAATTCACGACGGTGCAACTGATTAAAATAATGGTAGACACTTCACCGCATATTGGAAGAGAAGTTCTAAAAGCTGGAGCTTTAACACCTGTCATCTGTTTACTTAGTTCCTCCTTTTCGGAGAGCCAAGCATTAGCAGCCCTTCTACTTGGTCACTTTCTCGGGACTGATTCTGATTTGAAGGTTCATATTTCCCAAAGAGGGGCTATTCCACCATTAGTTCACATGCTTCAGTCCCAAAATACTAACCTTCGGAAAGCATCAGCTTTTGTACTTGTGATATTAGCACAGGACTCACATAATCAAGTTAGTATTGCTCATAGTGGAGGTATAGAGCCTATGCTCAATCTTTTTCAATCGGACAATCCAACAGTTCAACAATATGCTGCTCGTGTTCTCTATTCTCTTGCTGATAATGAGGACATTGTTGCAAACATTATTAAAGTTGGCGGGTTTGAAAAGCTAAAGGATTTACATTTCACCGAGGAACCTATCAGCGAGTTTGTAGCAATCACGTTGTTAAGATTAGAACGACACATGCAAGGGCGAACATTGAAATACCTAATCCATCTTATGTGTTCTGCGGAAGAAAGGGTTAGAAATCATGTAGTTATTGCTCTTGCTCATTTATGTTCTCCTCCAGATCATGAAACTGTATTTATTCACAATGAAGGATTAGAGTTGCTGCTGAATATTCTTCAATCTCAATGCACAATACAGAAGCGCAAGGCTTCAATGGCGCTAAGCATGTTGGCTAGTAGAGCCAATTTCATTTCCTCTCTCATTCAGACTATTTCTCCATCACCAACTTCCCAGATGGACTTGGGCGAGGAATCTATCAACAATCCAAAGCTTTCTGATATCACATTCCTGGTTGAAGGAAAAATATTTTATGCTAATAAAGATCGTTTAGTTTCTTCAAGTGTATTTCAGACCATGTTTGAGGCAGAGTATTTTGAAAAGGAAACCAAACAAGCAGTGATTCCAAATATTAAATGGGATGTCTTTAAATTAATGATGAGATTTATATACACTGGAACAGTAGATGTCAAATTGGATGACGCTAAAGACCTCCTAAGAGCTGCAGATCAATATCTTCTTCAAGACCTTAAGCTTATTTGTGAACGTGTTATTGCTAAAAGTATTTCACCAGAAAATGTTTCGCTATTGTTGGATCTCTCAGAAGATTTCAGTGCTAATACATTGAAAAATGCATGCATACTGTATATGCTAGAGAAGTTTGATAGATTGCATTCAAAACGATGGTATTATACCATGCTTCATCGCATTGTACCAGACATAGATACTCTCTTCTCAACTTTACTTATTATGGATCAAAGCAATGAAGATGCTTCTGTTGCATACTTGTATTAA 2100 0.3938 MDSSARQSLKRKLAEEVKDSLCKRVPPTFTSIILKTLFLLNSFDHVLLNKLITILVKLCKTTKHEIHDDFIDILVNNGAVQALVRILHLPEKVVEDYSDRLIQARLLQLKKGCAFILGTLAKKSVYQQLIIDAGAFLYLLRLLKSHKTIPKSPSVPGFLRRVVDAISKLAYKNNKVKMLIRKEDGIAPLIELLEFKVKKVQVAVTNALGTLAFDNAHTVTKMVECNALPSLVLMLQSEDSVTQFTTVQLIKIMVDTSPHIGREVLKAGALTPVICLLSSSFSESQALAALLLGHFLGTDSDLKVHISQRGAIPPLVHMLQSQNTNLRKASAFVLVILAQDSHNQVSIAHSGGIEPMLNLFQSDNPTVQQYAARVLYSLADNEDIVANIIKVGGFEKLKDLHFTEEPISEFVAITLLRLERHMQGRTLKYLIHLMCSAEERVRNHVVIALAHLCSPPDHETVFIHNEGLELLLNILQSQCTIQKRKASMALSMLASRANFISSLIQTISPSPTSQMDLGEESINNPKLSDITFLVEGKIFYANKDRLVSSSVFQTMFEAEYFEKETKQAVIPNIKWDVFKLMMRFIYTGTVDVKLDDAKDLLRAADQYLLQDLKLICERVIAKSISPENVSLLLDLSEDFSANTLKNACILYMLEKFDRLHSKRWYYTMLHRIVPDIDTLFSTLLIMDQSNEDASVAYLY* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0013 699 Gene3D Potassium Channel Kv1.1; Chain A 519 662 IPR011333 -
Pvu6g0013 699 Pfam BTB/POZ domain 521 622 IPR000210 GO:0005515
Pvu6g0013 699 ProSiteProfiles BTB domain profile. 528 594 IPR000210 GO:0005515
Pvu6g0013 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 351 393 IPR000225 GO:0005515
Pvu6g0013 699 SUPERFAMILY ARM repeat 49 193 IPR016024 -
Pvu6g0013 699 Gene3D - 39 261 IPR011989 -
Pvu6g0013 699 Gene3D - 262 422 IPR011989 -
Pvu6g0013 699 SMART arm_5 454 495 IPR000225 GO:0005515
Pvu6g0013 699 SMART arm_5 340 380 IPR000225 GO:0005515
Pvu6g0013 699 SMART arm_5 299 339 IPR000225 GO:0005515
Pvu6g0013 699 SMART arm_5 123 171 IPR000225 GO:0005515
Pvu6g0013 699 SMART arm_5 67 122 IPR000225 GO:0005515
Pvu6g0013 699 SMART arm_5 173 213 IPR000225 GO:0005515
Pvu6g0013 699 SMART arm_5 215 255 IPR000225 GO:0005515
Pvu6g0013 699 SMART BTB_4 528 624 IPR000210 GO:0005515
Pvu6g0013 699 Gene3D - 423 517 IPR011989 -
Pvu6g0013 699 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 688 IPR044282 -
Pvu6g0013 699 SUPERFAMILY POZ domain 512 622 IPR011333 -
Pvu6g0013 699 Pfam Armadillo/beta-catenin-like repeat 340 379 IPR000225 GO:0005515
Pvu6g0013 699 SUPERFAMILY ARM repeat 158 500 IPR016024 -
Pvu6g0013 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 352 IPR000225 GO:0005515
Pvu6g0013 699 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 4 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0013 Pvu-Chr6 269921 273986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0013 264 504 U-box Gene Family AT2G23140 24.691 2.22e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pvu6g0013 BTB 4.1e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0013 - - gmx:100783124 620.157