Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu6g0007 | ATGAGTATTCCACAAGCTGCTGCTGCTGCTGCTGCTGCAACTAGTCCTCCTCCACATCTCTATCCACAGGAGCTACAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCTATACTCTTCTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAAAGAAGGGCTTCCTCTCTCTCTTCCTCTTCTCCTCACTTGCTTCCGAGGAACATTGCCAATCCACCAACCACCACTCCCTATCATTCATCACCTTGTCGATTGGATCTGACCCTCCAATTCCTGGATAAGCTTCCAAGGATTTTATTTGATGAGGATTTGCTAGCAAGAGATTCACCGTGTTGTGTTTGTCTGGGGGAGTTTGAGGTGAAGGAAGAGGTGGTGCAGATTCCTTATTGCAAGCACGTGTTCCACTTAGATTGTATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACTACCAAGTTCATCAATCCAGCACCGCCTATTAATATTATATCAGACCCACCCCAGCATGGTGCTATCTTTTCAGACTCTCCATTGCACACTCCATCATTGCCACCTCACTCACAACATCATCAACAACCTGGTGCTTCCTCAAATGCTGCTAATTTGCCAAGGGAATGA | 660 | 0.4515 | MSIPQAAAAAAAATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSPHLLPRNIANPPTTTPYHSSPCRLDLTLQFLDKLPRILFDEDLLARDSPCCVCLGEFEVKEEVVQIPYCKHVFHLDCIHHWLQSNSTCPLCRCSIIPTTTKFINPAPPINIISDPPQHGAIFSDSPLHTPSLPPHSQHHQQPGASSNAANLPRE* | 220 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu6g0007 | 219 | Pfam | Ring finger domain | 115 | 157 | IPR001841 | - | |
Pvu6g0007 | 219 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 162 | IPR013083 | - | |
Pvu6g0007 | 219 | SUPERFAMILY | RING/U-box | 93 | 164 | - | - | |
Pvu6g0007 | 219 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED | 12 | 167 | - | - | |
Pvu6g0007 | 219 | MobiDBLite | consensus disorder prediction | 194 | 219 | - | - | |
Pvu6g0007 | 219 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 157 | IPR001841 | - | |
Pvu6g0007 | 219 | MobiDBLite | consensus disorder prediction | 188 | 219 | - | - | |
Pvu6g0007 | 219 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 12 | 167 | - | - | |
Pvu6g0007 | 219 | SMART | ring_2 | 115 | 156 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu6g0007 | Pvu-Chr6 | 157223 | 159449 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu6g0007 | 26 | 162 | C3H Transcription Factor Family | AT4G10150 | 42.336 | 9.53e-35 | 122 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu6g0007 | K19039 | - | gmx:100794298 | 308.145 |