Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0007 ATGAGTATTCCACAAGCTGCTGCTGCTGCTGCTGCTGCAACTAGTCCTCCTCCACATCTCTATCCACAGGAGCTACAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCTATACTCTTCTCCATCATTCTCTTTCTCTTGTTTTACTTGTTCTACCTCAAAAGAAGGGCTTCCTCTCTCTCTTCCTCTTCTCCTCACTTGCTTCCGAGGAACATTGCCAATCCACCAACCACCACTCCCTATCATTCATCACCTTGTCGATTGGATCTGACCCTCCAATTCCTGGATAAGCTTCCAAGGATTTTATTTGATGAGGATTTGCTAGCAAGAGATTCACCGTGTTGTGTTTGTCTGGGGGAGTTTGAGGTGAAGGAAGAGGTGGTGCAGATTCCTTATTGCAAGCACGTGTTCCACTTAGATTGTATACATCACTGGCTGCAATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACTACCAAGTTCATCAATCCAGCACCGCCTATTAATATTATATCAGACCCACCCCAGCATGGTGCTATCTTTTCAGACTCTCCATTGCACACTCCATCATTGCCACCTCACTCACAACATCATCAACAACCTGGTGCTTCCTCAAATGCTGCTAATTTGCCAAGGGAATGA 660 0.4515 MSIPQAAAAAAAATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSPHLLPRNIANPPTTTPYHSSPCRLDLTLQFLDKLPRILFDEDLLARDSPCCVCLGEFEVKEEVVQIPYCKHVFHLDCIHHWLQSNSTCPLCRCSIIPTTTKFINPAPPINIISDPPQHGAIFSDSPLHTPSLPPHSQHHQQPGASSNAANLPRE* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0007 219 Pfam Ring finger domain 115 157 IPR001841 -
Pvu6g0007 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 162 IPR013083 -
Pvu6g0007 219 SUPERFAMILY RING/U-box 93 164 - -
Pvu6g0007 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 12 167 - -
Pvu6g0007 219 MobiDBLite consensus disorder prediction 194 219 - -
Pvu6g0007 219 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pvu6g0007 219 MobiDBLite consensus disorder prediction 188 219 - -
Pvu6g0007 219 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 12 167 - -
Pvu6g0007 219 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0007 Pvu-Chr6 157223 159449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0007 26 162 C3H Transcription Factor Family AT4G10150 42.336 9.53e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0007 K19039 - gmx:100794298 308.145