Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu6g0004 ATGGCAATGGTTGAGCCTCTTAATGTTACAAGTCTAAGGAATAAGCTCAAGACGCTTTGTGCTGTGGATGGCTGCTCCTACGTCATTTTGTGGCGCATTCATCCTCAAAATACCTTGGTGCTGAGAGTGGAAGATGTATACTGTGAAGATCAATTGGGAGAAGAGATTGTCAACACAGTTCCACATGTCCATTCGATGGGTGAAGGAATTGTTGGTCAAGCTGCTTTGACTGGCAAGCACAGATGGGTGGACTCAGATGGTCAAATGTGTGAGGAAGATTATGGTTTGCATCCACAGTTCTTGTCCGGGATAAAGACAGTTGTGGTGATATCTGTTAAACCATGGGGAGTGGTACAATTTGGATCCAAAAAGAAGATTTTGGACAGAGTGAAATTTGTGGAACAAACAGAAAGGTTGTTGAGGGGGATAGAAGATGAGGGTTTGCTTGACGTATTCAATAGTAGTAGAGATCTATATCTAGATTGTGAAAACTATGATCTCAATGGATTGTTGGCTTCCATATCTTCAGAAAATTTATATGATTGGAATCTCAAATCTGTTCATAGTGACAACTCTGAAATGCTATTGGGAAATTCATGTTCCTATGCAAGTCTCGATGACTCCTTCCCTTCCATGGATATGATTCTTGTTGAAGAAGGAACGACACCGATGCATGGATTCTCTTATCTTTGTGACCAATTGGCACCTGCAGTAGAAGCTCAAGCTGTATTCTCGGATAGGGATAGTAATGATTATTCCATGAACACCATAATTTCTAGAAACCCCAGTTTTGGCACATGGAGTGGTGAAATTTCATCATTGAATTCACTGGGGCAACAACCGGTATCTGAGATAAGGGATGAAGATGTTGAGTATATGCACTGTAAAGAGGCAAATGAATTTTCTAGTAACAAGCTAGCTGTTCAGGATTCAACATTGTCCTCATTAATTAGTTTGAATAGACTGTTAGACCCAACAGGCCCATTTCAATACCACACAGGATTTCCACTGGATATCCAACACTCTGCTCAATCTAGTATTGTGGGAGAAGTTAATTATCCTGATACTTTGAGTATGGTGCATGATCTCCCCAAGGACCTAGAGCCAGTTGATTCATTAGAACAATTTTCAAAGTTCTTCTCCATGAATGATCTCTGCCATTTGTTAGCTCCTTCAGACCACAGCATTTATGGAACAGTGACTGCATTGGATGAGTCAAGAGGATGTAATACCCCATCTTTTGGTCTGATTGGTAGTGGTGGCATTGATGATGTTCCAGTCACATATCAAGCTGAGCATAATAGTTCTATCACAACTACACCCAACATGGATGGTCAAGAAACATACTCAGCTATGCATTGTTCGGAAAACAGCCTCTTGGATAGCATGAGACATCATTTGAGCTGTGACCAAGCCGAGGAGTGCTGGGACAGTGTGGCTATGCTTACACCAGTGGTGAGTGCTGCTGCTACTAACACTGCTTTCTCTGATTGCATATCAGAGTCAAATGTTGGAACATTTGGCTCTGGAAAGAGATTATTCTCAGAGTTAGGAATTGAAGAGTTTCTCCATGGTTCTAATTTTGGAGATCAACCATCAACCAATAGAAAGCAGAGGACAGAATCTTCACCTGAGAAAAGAAATCCAAAGCATTTGACTAGTCATGCTTTGGTTCCTAAATTGGACATAACAAACAATCTTGCAGACCAGAAAGAAATATTCTCAAAGTCACAGGTAGGAGTAGGAGGCTTGTGGATAAATGACAGAAATGGAAATACTGGGAGAGCTGGTCGGGCAGATGCAAAGCCTCAAAAGGTGGTGGAACACAATAAGGTCACCAGGAAAAGGGCTAGACCAGGTGAAACAACTCGACCGAGACCTAAAGATCGTCAGCAGATTCAAGACCGCATTGGAGAGTTGAGAGGGATCATTCCCAATGGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCGAACCATCAGATACATGATATTCTTACAAAGCATCACCAAGTATGCAGACAAGCTGCAAGAGCCCAGTGAGCCTAAGCTCATTGAGAAGGCAAAAGACAGCAGTGTGGGAGATAGCAAGAAAAGTGGTGGTGGTGTTACATGTGCATTTGAAGTGGAAGGTCAAACAATGGTATGCCCAATTATAGTGGAGGATATGGACCCACCTGGCCAAATGCTTATAGAGATGCTTTTTGAAGAGCAGGGCTCCTTCCTTGAGATAGTGGACATCATTGGTGGGTTTGGATTGAATATCTTGAAGGGAAAGATGGAAATTAGGGACACTAAAATATGGGCACGCTTTATAGTTGAGGCGAACAGACATGTAACAAGGATAGATGTATTTTGGTCCCTCATCAGAGTTGTACAGCAGAAAAACACATCTGGAGCGGATTCACCAAACAGGCATTGTAATATTAATGATGCTGCCTTTTCTTCAATGGACAAATATGAGCAACAGATATGCCAGTACTACCCATGTACATGA 2496 0.4187 MAMVEPLNVTSLRNKLKTLCAVDGCSYVILWRIHPQNTLVLRVEDVYCEDQLGEEIVNTVPHVHSMGEGIVGQAALTGKHRWVDSDGQMCEEDYGLHPQFLSGIKTVVVISVKPWGVVQFGSKKKILDRVKFVEQTERLLRGIEDEGLLDVFNSSRDLYLDCENYDLNGLLASISSENLYDWNLKSVHSDNSEMLLGNSCSYASLDDSFPSMDMILVEEGTTPMHGFSYLCDQLAPAVEAQAVFSDRDSNDYSMNTIISRNPSFGTWSGEISSLNSLGQQPVSEIRDEDVEYMHCKEANEFSSNKLAVQDSTLSSLISLNRLLDPTGPFQYHTGFPLDIQHSAQSSIVGEVNYPDTLSMVHDLPKDLEPVDSLEQFSKFFSMNDLCHLLAPSDHSIYGTVTALDESRGCNTPSFGLIGSGGIDDVPVTYQAEHNSSITTTPNMDGQETYSAMHCSENSLLDSMRHHLSCDQAEECWDSVAMLTPVVSAAATNTAFSDCISESNVGTFGSGKRLFSELGIEEFLHGSNFGDQPSTNRKQRTESSPEKRNPKHLTSHALVPKLDITNNLADQKEIFSKSQVGVGGLWINDRNGNTGRAGRADAKPQKVVEHNKVTRKRARPGETTRPRPKDRQQIQDRIGELRGIIPNGGKCSIDSLLDRTIRYMIFLQSITKYADKLQEPSEPKLIEKAKDSSVGDSKKSGGGVTCAFEVEGQTMVCPIIVEDMDPPGQMLIEMLFEEQGSFLEIVDIIGGFGLNILKGKMEIRDTKIWARFIVEANRHVTRIDVFWSLIRVVQQKNTSGADSPNRHCNINDAAFSSMDKYEQQICQYYPCT* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu6g0004 831 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 617 666 IPR011598 GO:0046983
Pvu6g0004 831 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 630 672 IPR036638 GO:0046983
Pvu6g0004 831 MobiDBLite consensus disorder prediction 601 632 - -
Pvu6g0004 831 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 137 IPR025610 -
Pvu6g0004 831 MobiDBLite consensus disorder prediction 524 554 - -
Pvu6g0004 831 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 11 825 IPR043561 GO:0003700|GO:0006355
Pvu6g0004 831 MobiDBLite consensus disorder prediction 588 632 - -
Pvu6g0004 831 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN-RELATED 11 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu6g0004 Pvu-Chr6 77476 81824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu6g0004 614 802 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 53.968 1.39e-60 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu6g0004 - - pvu:PHAVU_006G000400g 1682.92