Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1911 ATGCAATTAGCGTCGAATGGCGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAATCACCACCATCTTCATTTGCAACCACCTGGAGAACCCTCCTTTTCCTGTGAAATTATTCCTATTTCTCCCAACCATGATGTCGATCATGATTTACAAAATGTTCGGGTTGATGAGACTTGTAATCTCGTAATTGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACGCAAAAGTACGTCCACAGATCATGTCTTGATAACTGGAGATCCACCAAGGAGGGCTTCGCCTTTTCTCACTGTACAGAATGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGCTTCTTCATAGCGATAATATGTGGCCAAAGAATCAATGAGCGCCACTACCACGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTTGTAGAAGATCGAGAACATGTAAAGAGTGTGCCTGAACTTGATCCGAGTCACGTGACGGAGCTAAGGATGTTGGGCCTGTACTAG 774 0.4238 MQLASNGDKEECSESEPILNHHHLHLQPPGEPSFSCEIIPISPNHDVDHDLQNVRVDETCNLVIADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKSVPELDPSHVTELRMLGLY* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1911 257 SUPERFAMILY RING/U-box 66 121 - -
Pvu5g1911 257 PANTHER OS02G0132300 PROTEIN 2 256 - -
Pvu5g1911 257 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 256 - -
Pvu5g1911 257 SMART ringv_2 69 118 IPR011016 GO:0008270
Pvu5g1911 257 ProSiteProfiles Zinc finger RING-CH-type profile. 62 124 IPR011016 GO:0008270
Pvu5g1911 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 122 IPR013083 -
Pvu5g1911 257 CDD RING_CH-C4HC3_MARCH 70 118 - -
Pvu5g1911 257 Pfam RING-variant domain 70 117 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1911 Pvu-Chr5 40516413 40520210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1911 57 216 C3H Transcription Factor Family AT1G50440 75.625 1.33e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1911 - - vun:114185559 515.383