Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1908 ATGCATTCCACCATCTTCACGAGGTGGTCTTTTTTCTTTTCTTTGTTCTTTTATGCTGTCTCTGCACTCACCTCCGATGGGGTCACCCTGTTGTCACTCATGCGCCGTTGGGCATCTCTGCCTCCTTCCATGACCACCACCTGGCTTGCCTCTGACTCCACTCCATGCTCCTCCTGGGTAGGAGTCCAATGTGACCATGCCCACCATGTCGTCTACCTTAACCTCACAGGTTATCAGATTTCTGGTCAATTGGGTCCTGAAATTGGAAATCTTTCTCGCCTACACTACTTAGACCTGACTGACAACAACCTTAATGGCCAAATACCTCACTCATTACAAAACTTGCATAGCCTCCGGTTTCTCAGCCTTGCTAATAATCAGCTATCTGGTGAAATTCCACATTCCTTGACTCAAATCCCTACACTGCATTTGGTTGATCTATCATATAACATTTTAAACGGGTCCATCCCCACCAGTATTGGGAACATGTCTGAGCTCCTTCAGTTGTATCTTCAGAGTAACCACTTGTCTGGGACAATTCCTTCATCCACTGGGAATTGCAGTAAATTACAAGAATTCTTTTTGGATAGGAATGAGTTGGAGGGTATCCTGCCTCAGAGTCTGAATAATCTCAATCATTTGGCTTATTTTGATGTGGCCGGGAATAGACTTACGGGTTCAATTTCTTTGGGTTTCAGTAGTTGTCAAAATTTAGTATTTTTGGATCTCTCATTCAATGACTTTAGTGGTGGCCTTCCCTCAAGCATGGGGAACTGTAGTAGTTTATCGCAACTTGTTGCTGTGAGCTGCAATTTGGTTGGGAATATTCCGCCCTCCTTTGGTCTACTCACCAAGCTTTCTATTCTATACCTTCCAGAAAACCATTTATCTGGAAGAATACCTCCAGAAATTGGAAACTGCAAGTCTCTGACAGAGTTACAACTGTATTCCAATCGACTTGAGGGAAACATTCCAAGTGAATTGGGAAAACTGAGAAAACTGGTGGACTTGGAATTGTTTTCAAATCAATTGAGTGGTGAAATTCCACTCAGCATCTGGAAGATTAAGGGTCTTGAGAGTCTGCATCTGTATAATAATAGTCTTTCTGGAGAATTGCCATTGGAGATTGCGGAACTCAGGCAGCTGAAAAACATCTCGTTGTTTAACAACCAGTTTTCCGGTGTCATACCTCAAAGCTTGGGAATTAACAGCAGTTTAGTTCTATTGGACTTCACAAATAATAAATTCACTGGCAACATCCCACCAAATCTGTGTTTTGGCAAGAAGTTAAAGATCCTGACTTTGGGTATGAATCAACTTCAAGGTAGTGTACCTTCTGATCTTGGGAGCTGTACAACCCTTACAAGATTAATCCTCAAACAAAATAATTTTACTGGGCCTCTTCCTCATTTTAAGAGCAGCCAAAATCTCGTTTATATGGATATTGGCAACAACAAAATTCATGGAGCAATTCCATCAAGTTTGGGAAACTGCAGACGTATCACAGACTTGATTTTGTCCATGAACGAATTTACAGGGCCCATACCCTCAGAGCTAGGGAACCTAGTGAATCTTCGAACTTTGAATCTCGCTCACAACAACTTAGAAGGTCCTTTGCCTTCTCAGCTATCAAAGTGCACCAAAATGGACAGGTTTGATGTGGGGTTCAATTTCCTAAATGGTTCATTGCCATCAAGTCTGCAGAACTGGACAAGGCTAACCACATTAATTTTGAGCGAGAATCACTTCAGTGGGGGCTTCCCATCTTTTCTGTGGGAATTTAAAATGATTTCTGAGCTACAACTTGGTGGCAATCTGTTTGGAGGCAAAATTCCCATATCGGTTGGAGCAATGCCGGAAGTGATCTATGATTTGAATCTAAGTTCAAATTTGTTGACAGGTGAAATTCCTGTAGAGATTAGGAACCTGAAAATGTTGCAAACATTGGATCTGTCTCAGAACAATTTGACAGGAAGCATAGAAGTTCTTGGAGAACTCATCTCCTTAGTGGAACTCAATATTTCTTACAATTCTTTCCGTGGTCTTGTACCAAAGACGTTGATGAAGTTGCTTAATTCTCCCTTGTCATCATTCCTTGGCAATCCTGGCCTATGCATCAGATGTTCAGCCTCAGATGGCCTGGCTTGCTCCGAAAGAAGCTCTATAAAATCATGTGATGACAAATCTAGTGAACAGAAAGGCTTCAGTAACGTTAAAATTGTGATGATAGCTCTTGGATGCGCCATATTTGTTGTTTTGTTGTTGCTGGGAGTATTTTGTATTGTTGTTTTTGGCAGAACAGCTAAGCAGGAAAACCATATCTCTACTGAACAGGGTTCTTCATCCCTTCTTAACAAAGTCATGGAGGCTACAGAAAACCTGAATGATCGGTATATTATTGGTAGAGGAGCCCATGGAATTGTTTATAAAGCTCTGACGGGTCCAGACAAAGCTTTTGCTGTGAAAAAGATAGGATTTGCTGCGAGCAAAGGTAAGAACTTGAGCATGGTGAGAGAAATTCAGACCCTTGGGAAAATTAGGCATAGAAATCTGGTCAAGTTGGAAGAATTTTGGATTAGAAAAGAGTGTGGTCTAATTTTGTACAGCTACATGGCAAATGGAAGTCTCCATGACGTTTTGCATGAAAGGACACCAGTACCAACCTTAGAGTGGAATGTCAGGTATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTCCACTATGACTGTGACCCTCCCATAGTGCACAGAGACATCAAGCCCAGCAATATACTTCTGGACTCTGATATGGAGCCTCACATTGCTGACTTTGGAATTGCCAAACTTCTGGAACAGTCTTCTGCTTCAAATACTTCCATTTTTGTGCCGGGTACAATTGGTTATATTGCTCCAGAGAATGCTTATACAACAACAAATAGTAGGGAGTCTGATGTGTACAGTTACGGGGTTGTTCTGCTTGAGCTGATAACCAGAAAGAAGGCAGTAGCAGATCCTTCGTACTTGGAGGGTGGTGTTGTGGTGGATTGGGTTAGGTCTGTGTGGAGGGAAACAGGAGAAATTCATCAAATTGTTGATTCATTCCTTTCTGACCAATGTGTAGATACCCATATAATGGAAAACGTTACCAAAGTGCTTATGATTGCTTTGAGATGTACTGAGAATGATCCACACAAGAGACCCAGAATCAGAGATGTTATTAATCAATTATCAGATGCTAATCCACAGACAAGAAGCACAAAGGGTATCTAA 3255 0.4163 MHSTIFTRWSFFFSLFFYAVSALTSDGVTLLSLMRRWASLPPSMTTTWLASDSTPCSSWVGVQCDHAHHVVYLNLTGYQISGQLGPEIGNLSRLHYLDLTDNNLNGQIPHSLQNLHSLRFLSLANNQLSGEIPHSLTQIPTLHLVDLSYNILNGSIPTSIGNMSELLQLYLQSNHLSGTIPSSTGNCSKLQEFFLDRNELEGILPQSLNNLNHLAYFDVAGNRLTGSISLGFSSCQNLVFLDLSFNDFSGGLPSSMGNCSSLSQLVAVSCNLVGNIPPSFGLLTKLSILYLPENHLSGRIPPEIGNCKSLTELQLYSNRLEGNIPSELGKLRKLVDLELFSNQLSGEIPLSIWKIKGLESLHLYNNSLSGELPLEIAELRQLKNISLFNNQFSGVIPQSLGINSSLVLLDFTNNKFTGNIPPNLCFGKKLKILTLGMNQLQGSVPSDLGSCTTLTRLILKQNNFTGPLPHFKSSQNLVYMDIGNNKIHGAIPSSLGNCRRITDLILSMNEFTGPIPSELGNLVNLRTLNLAHNNLEGPLPSQLSKCTKMDRFDVGFNFLNGSLPSSLQNWTRLTTLILSENHFSGGFPSFLWEFKMISELQLGGNLFGGKIPISVGAMPEVIYDLNLSSNLLTGEIPVEIRNLKMLQTLDLSQNNLTGSIEVLGELISLVELNISYNSFRGLVPKTLMKLLNSPLSSFLGNPGLCIRCSASDGLACSERSSIKSCDDKSSEQKGFSNVKIVMIALGCAIFVVLLLLGVFCIVVFGRTAKQENHISTEQGSSSLLNKVMEATENLNDRYIIGRGAHGIVYKALTGPDKAFAVKKIGFAASKGKNLSMVREIQTLGKIRHRNLVKLEEFWIRKECGLILYSYMANGSLHDVLHERTPVPTLEWNVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPSNILLDSDMEPHIADFGIAKLLEQSSASNTSIFVPGTIGYIAPENAYTTTNSRESDVYSYGVVLLELITRKKAVADPSYLEGGVVVDWVRSVWRETGEIHQIVDSFLSDQCVDTHIMENVTKVLMIALRCTENDPHKRPRIRDVINQLSDANPQTRSTKGI* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1908 1084 Gene3D Transferase(Phosphotransferase) domain 1 871 1082 - -
Pvu5g1908 1084 SUPERFAMILY RNI-like 385 693 - -
Pvu5g1908 1084 Gene3D Phosphorylase Kinase; domain 1 764 870 - -
Pvu5g1908 1084 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 90 1069 - -
Pvu5g1908 1084 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 159 - -
Pvu5g1908 1084 ProSiteProfiles Protein kinase domain profile. 794 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1908 1084 SUPERFAMILY Protein kinase-like (PK-like) 780 1071 IPR011009 -
Pvu5g1908 1084 SUPERFAMILY RNI-like 73 425 - -
Pvu5g1908 1084 Pfam Protein kinase domain 799 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1908 1084 Pfam Leucine rich repeat 90 128 IPR001611 GO:0005515
Pvu5g1908 1084 Pfam Leucine rich repeat 169 224 IPR001611 GO:0005515
Pvu5g1908 1084 Pfam Leucine rich repeat 476 535 IPR001611 GO:0005515
Pvu5g1908 1084 ProSitePatterns Protein kinases ATP-binding region signature. 800 823 IPR017441 GO:0005524
Pvu5g1908 1084 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 12 159 - -
Pvu5g1908 1084 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 90 1069 - -
Pvu5g1908 1084 ProSitePatterns Serine/Threonine protein kinases active-site signature. 916 928 IPR008271 GO:0004672|GO:0006468
Pvu5g1908 1084 Gene3D Ribonuclease Inhibitor 405 711 IPR032675 -
Pvu5g1908 1084 ProSiteProfiles Leucine-rich repeat profile. 645 667 IPR001611 GO:0005515
Pvu5g1908 1084 SMART serkin_6 794 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1908 1084 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Pvu5g1908 1084 Gene3D Ribonuclease Inhibitor 188 262 IPR032675 -
Pvu5g1908 1084 Gene3D Ribonuclease Inhibitor 333 404 IPR032675 -
Pvu5g1908 1084 Gene3D Ribonuclease Inhibitor 263 332 IPR032675 -
Pvu5g1908 1084 SMART LRR_typ_2 91 114 IPR003591 -
Pvu5g1908 1084 SMART LRR_typ_2 666 689 IPR003591 -
Pvu5g1908 1084 SMART LRR_typ_2 163 187 IPR003591 -
Pvu5g1908 1084 SMART LRR_typ_2 643 665 IPR003591 -
Pvu5g1908 1084 SMART LRR_typ_2 283 307 IPR003591 -
Pvu5g1908 1084 SMART LRR_typ_2 522 546 IPR003591 -
Pvu5g1908 1084 SMART LRR_typ_2 188 210 IPR003591 -
Pvu5g1908 1084 SMART LRR_typ_2 115 139 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1908 Pvu-Chr5 40494047 40497958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1908 14 1080 Receptor kinase-like Gene Family AT1G73080 50.861 0.0 1027
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu5g1908 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1908 - - gmx:100778035 1718.75